Gene Rcas_1346 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1346 
Symbol 
ID5538818 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1723151 
End bp1724350 
Gene Length1200 bp 
Protein Length399 aa 
Translation table11 
GC content59% 
IMG OID640893483 
Productglycosyl transferase group 1 
Protein accessionYP_001431460 
Protein GI156741331 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0438] Glycosyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGTGC GAGTTGCGCA TATCACAACG ATCGACCAAT CGCTGCGCTA TCTGTTGCTC 
AATCAACTGC GCAGCATCGC CGACGCCGGA TATCAGGTCA CCGGAATTTC TGCGCCGGGA
CCGGATGTGC CTGCTATTGA GGTGCGTGGC ATTCGCCATA TTGCGGCGCC GCTCACGCGA
CGTCTGACGC CATTCGCCGA TCTGCGCGCC CTGATGCGTC TGTACCGGAT ATTTCGCCAG
GAACATTTCA CGATTGTGCA CACCCACACT CCCAAACCAG GGCTGTTAGG GCAACTGGCA
GCGCGGATGG CGGGCGTGCC GGTGGTCGTT AACACCATTC ATGGCTTTTA TTTCCATGAG
CACATGCCGC CAGCGCAGCG ACGCTTCTAT ATCACTATGG AGCGCATCGC GGCGCGCTGT
TCCGACCTCA TTCTCTCGCA AAGCAGCGAA GACCTCGCCA CTGCCTTGCG TCTGGGCATC
TGCCCGCCTG AACGAATCCA GTTGCTCGGC AACGGTATCG ATATCCGGCG TTTCGACCGG
AGTCGGGTCG ATCCGGCGCA TCTGGCGCAC ATCCGGCAAT CACTGAGACT GCCGCCGGAT
GTGTCGGTGA TTGGCTTCGT TGGTCGCCTG GTTGCCGAGA AAGGCGTGAT CGAATTGGCG
CGCGCGGTTC AGCAGGTCCA ATCGCATTTC GGTCCGGTGA CGCTCCTGAT TGTCGGCGGT
GTGGATCGGG ACAAGGCGGA TGCGCTCACT CCCGAGACAA TTCAGGCGGC TGCGGGAACG
GCAACGTGCG TTTTTGCCGG CATTCGCCAG GATATGCCGG AAATGTATGC ACTGATGGAC
ATTTTTGCGC TGCCATCGTA CCGCGAAGGA TTTCCACGCG CGCCGATGGA AGCCTCGGCA
ATGGGTATTC CCTGTGTTGT AACCGACGTG CGCGGGTGTC GTGAGGCGGT TGAACACGGG
TGGAACGGTT TCCTGACACC GCTGCGTGAT GTCGATGCCC TCGCGCATGC GCTGGTGCAA
CTGCTTCAAG ACGAGAGTCT GCGCGCAACG ATGGGTGATG CGGGACGAAG GATGGCGCTC
GAACGGTTCG ATGAGCAACA GATATTTCAA CGGGTTATTG GCGCCTATCG TCACCTCCTG
CATAAGAAGG GGCTTCCGAC GCCGGAGAGT ACGATCATGC CCGCAACCAG TAGAGCCTGA
 
Protein sequence
MTVRVAHITT IDQSLRYLLL NQLRSIADAG YQVTGISAPG PDVPAIEVRG IRHIAAPLTR 
RLTPFADLRA LMRLYRIFRQ EHFTIVHTHT PKPGLLGQLA ARMAGVPVVV NTIHGFYFHE
HMPPAQRRFY ITMERIAARC SDLILSQSSE DLATALRLGI CPPERIQLLG NGIDIRRFDR
SRVDPAHLAH IRQSLRLPPD VSVIGFVGRL VAEKGVIELA RAVQQVQSHF GPVTLLIVGG
VDRDKADALT PETIQAAAGT ATCVFAGIRQ DMPEMYALMD IFALPSYREG FPRAPMEASA
MGIPCVVTDV RGCREAVEHG WNGFLTPLRD VDALAHALVQ LLQDESLRAT MGDAGRRMAL
ERFDEQQIFQ RVIGAYRHLL HKKGLPTPES TIMPATSRA