Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1259 |
Symbol | |
ID | 5538731 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 1629682 |
End bp | 1631055 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640893397 |
Product | glycosyl transferase group 1 |
Protein accession | YP_001431374 |
Protein GI | 156741245 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0438] Glycosyltransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00525262 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACGACT TCTCTCCCGA TGCCCTGCGG GTTGCCATGC TGGCGCGTGT TGTCTTTCCA CTCCACGGCT TTGGCGGTAT TGAACGTCAC GTCTTCCACC TGACGACGCA CCTGGCGCGG CTTGGCGTGC GGATCACGCT CTATGTGCAG ACACCGCACG GCCATACGCT CGATCTCGAT GATGATCCGG CGCGACCGAT CAACCCCTAT GCCGATGTTC TCCCCGGCAT CGAGCGCGTT ATGACACTAC GCTACGACTA TACCTCGCCG GCGCTGCGTC CCAATTCGAT TGCGGGACGA CAGATCAACT ATCCCTGGTA TTCCTGGCGG CTTGGGCGCA TAGCGGCGGC AGCCGCGCGG CGCGGCGCGT ATGACGTGGT GCATGCCCAG GGGTTGTGCG CATTCGGCTA TGGCTGGATC CGCGTCCGCG ATCCGTTGCT TCGTCGCGTT CCGTTTATCG CCAATCCGCA TGGACTGGAA GAGTATCGAA CACCCGACTG GCGCAAATGG CTGGCATATG CGCCCTTCCG CGCGCTCTAC TCCTACGGCA CGCGCTGCGC CGACCGGGCA ATCGCCACCG ATGCCTGCAC ACAAGACGAT CTGCCGCGAT ATCTGGGGGT CGATCCGGCG AAGGTCGTGG TCATTCCCAG CGCCATCGAC GCCGATGAGT GTCTGGCGCC GGTCAACGAC GCCACGCGCG CTGCGTTGCG CCAGCGATTT CGTCTCGATG AGGAGGACCT GACGATTCTC AGCGTTGGTC GGCTGGAGCG CAACAAAGGA TACCATATCC TGATCGACGC ACTCACCCGG CTGCGGGAGC GTCTGCCATC GCGCTGGCGC TGGTTGCTGG TGGGAGAAGG GAAGGAGCGT CGCGCGCTCG AACGCCAGGC GCAACGGGCT GGCATCATCC ATCACGTTAC CTTCGTGGGG CGGCTCAGCG ACGCCGAACT GCACAACCTT TACGAAGAGG TCGATCTGGT CGTTCACCCG ACGCTCTACG AGGGCTCCTC ACTCGTAACG CTGGAAGCCA TGATCCACCG CCGTCCGATA GTCGCATCGG TAGCAGGCGG CATTCCCGAT AAGGTCTTCA ATGGGCGCAA CGGGTATCTG GCGCGTCCCG GCGATGCCGA TGATCTGGCA TCCCGCATAC GGCTGGCGCT GGAACAGCGC GATCGCTGGG CAACATGGGG TGCAGAGAGC GTTCGCCTGG TGCGCGAGAC CTTCGACTGG CCCGTGGTGG CGCGCCGGAC GAAGCAGGAG TATGAGGTGA TGGTTGGGGG GCGAGGGGAG AGGCGAGAGG CGAGAGGGGA GGGGCATGAG GCGAGAGGCG AGAGGGGTGA GGCGAGAGGG GCGAGGGGCC CGACAATGGC GTAG
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Protein sequence | MHDFSPDALR VAMLARVVFP LHGFGGIERH VFHLTTHLAR LGVRITLYVQ TPHGHTLDLD DDPARPINPY ADVLPGIERV MTLRYDYTSP ALRPNSIAGR QINYPWYSWR LGRIAAAAAR RGAYDVVHAQ GLCAFGYGWI RVRDPLLRRV PFIANPHGLE EYRTPDWRKW LAYAPFRALY SYGTRCADRA IATDACTQDD LPRYLGVDPA KVVVIPSAID ADECLAPVND ATRAALRQRF RLDEEDLTIL SVGRLERNKG YHILIDALTR LRERLPSRWR WLLVGEGKER RALERQAQRA GIIHHVTFVG RLSDAELHNL YEEVDLVVHP TLYEGSSLVT LEAMIHRRPI VASVAGGIPD KVFNGRNGYL ARPGDADDLA SRIRLALEQR DRWATWGAES VRLVRETFDW PVVARRTKQE YEVMVGGRGE RREARGEGHE ARGERGEARG ARGPTMA
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