| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1236 |
|---|
| Symbol | |
|---|
| ID | 5538705 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 1597184 |
|---|
| End bp | 1597963 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640893371 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001431351 |
|---|
| Protein GI | 156741222 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAAGC GATTCTGGTC CTGGTTCTGG TTCATCGTCG GCGCGACGTA TTTTCTCGTG
CCGCTCTACG CCACGTTCGA TTTCTCGCTG CGCGCCCGGC GCGGTGATTT AAGTTTCGCT
GCATATGCGA ATGTGCTCAA CGACATCAGG TTTGTCGAGA GTTTCTGGTT TTCGCTCCAG
ACGGCGCTGG CGACGATTGC GATCAGCGCG CTGGTGATCG TGCCGACGGC ATATTGGGTG
CAGTTGCGTC TGCCGCGCCT GCGCCCGGTC GTCGAGTTCT TCACGCTGTT GCCGTTCGTT
GTCCCGGCGG TCGTGCTGGT CTTCAGTCTG GCGCGCACCT ACAGTCGCAC GCCGCTCACC
GATAGCCGTG AGGGGTTGTG GGTGTTGTTG GTCGGATCGT ATGTCATTCT ATCGTTCCCG
TACATGTATC GAGCGGTAGA TACCGGGTTG CGCTCGATTA ATATTCACGA TCTCACCGAA
GCGGCGCAGA GCCTGGGCGC CGGATGGTTT ACGATTTTGG CGCGCGTTAT CTTTCCGAAC
GTGTACGTTG CGCTCCTGAG CGGCGCGTTT ATCACCTTTG CCATCGTCAT GGGCGAGTTC
ACGATTGCTG CGCTGCTCGC GCAACCGGCG TTTGGTCCCT ACATGAACCG GCTCGCCAGC
AGCCGGGTGT ACGAACCGTC GGCGCTGGCA ATTATCAGTT TTGCGTTAAC GTGGGCGGCG
ATTGCCGCGC TTCAGTGGAT CGGTCAGGGT TCGCAGGCGC GTGTTGCAGG ACCACGCTGA
|
|---|
| Protein sequence | MLKRFWSWFW FIVGATYFLV PLYATFDFSL RARRGDLSFA AYANVLNDIR FVESFWFSLQ
TALATIAISA LVIVPTAYWV QLRLPRLRPV VEFFTLLPFV VPAVVLVFSL ARTYSRTPLT
DSREGLWVLL VGSYVILSFP YMYRAVDTGL RSINIHDLTE AAQSLGAGWF TILARVIFPN
VYVALLSGAF ITFAIVMGEF TIAALLAQPA FGPYMNRLAS SRVYEPSALA IISFALTWAA
IAALQWIGQG SQARVAGPR
|
|---|
| |