| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1230 |
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| Symbol | |
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| ID | 5538699 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 1588789 |
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| End bp | 1589700 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640893365 |
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| Product | PDZ/DHR/GLGF domain-containing protein |
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| Protein accession | YP_001431345 |
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| Protein GI | 156741216 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.181134 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTCCC CATCTGGCGC TGACCTGATC AGCGCCCTTT CGAACCAGAT GGCAGACGCC
GTTGAACGCA TTCGCCGCTC CCTGGTGACC GTCAACGGCA GACAGCGCCA GGCTGCAAGC
GGTATCATCG TCGCACCTGA CGAAGTGCTG ACAGCGGACC ACGTGCTCGA GCGCGACGAT
GACCTGACGA TTCAAACCGA CGATGGCCGC ACGCTGGCGG CGCGTCTGGT CGGACGAGAC
CGGACGAGCG ACCTTGCGCT TCTGCGCATC GATGGACTCG GCGGCGATAC CGCTGCTCAG
GCTGACGCAC CTGCGCGGGT TGGTCAGTTC GTTCTTGCCG TCGGGCGACC TTCTCCGGGC
GGACCAATGG CAAGCCTGGG GGTTGTGAGC GCGGTCGGTG GACCGTTGCG CACCCGACGC
GGCATGATCG AGCAGGTGAT CCAGACCGAC GCCACTCCCT ACCCTGGCTT CTCTGGCGGC
GCACTGATCG ATGTGACAGG CGCGGTGTTG GGGCTGTTCA CCACCGGACT GATCGGCGGT
GTGGCGCTGG CAATTCCGTC GCCGTTTGCC TGGCGCATCG CGCACACCCT GGCGCATCAG
GGGCATGTCC GACGCGGCTT TCTCGGCATT AGCAGCCAGC CGGTCACCAT TCCGCCGGGG
CAACGCGCCG GACGCACTCA GGAACAGGGA CTGTTGATCG TGCGCGTCGA GCCGGATAGC
CCGGCATATC ACGCCGGACT GCTCATCGGC GACATTATGG TCGGTATCGA TGGCGTCGTG
CTGAACGACA CCGACGACCT CCAGGCTGTA TTGAGCGGCG ATCGCGTTGG CGCGACCGTT
TCGGCGGAAA TCATTCGCGG CGGGACGCTG GTCACCCTGC CGGTGACGAT TGGCCAACGC
AAAGGTGCAT AG
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| Protein sequence | MTSPSGADLI SALSNQMADA VERIRRSLVT VNGRQRQAAS GIIVAPDEVL TADHVLERDD
DLTIQTDDGR TLAARLVGRD RTSDLALLRI DGLGGDTAAQ ADAPARVGQF VLAVGRPSPG
GPMASLGVVS AVGGPLRTRR GMIEQVIQTD ATPYPGFSGG ALIDVTGAVL GLFTTGLIGG
VALAIPSPFA WRIAHTLAHQ GHVRRGFLGI SSQPVTIPPG QRAGRTQEQG LLIVRVEPDS
PAYHAGLLIG DIMVGIDGVV LNDTDDLQAV LSGDRVGATV SAEIIRGGTL VTLPVTIGQR
KGA
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