Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1173 |
Symbol | |
ID | 5538639 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 1517806 |
End bp | 1518798 |
Gene Length | 993 bp |
Protein Length | 330 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640893305 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_001431288 |
Protein GI | 156741159 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1175] ABC-type sugar transport systems, permease components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.848651 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.375032 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGACAGG CAAAGACGCT CAGCGCACAT CCCGCCCGTC GAGTGCGCTG GATGAACCGG GATCGGGCGG TTGCACTGTT GATGATCGCC CCATCGGCGC TGGCAATCGC CGTCTTCGTC TATGGTTTCA TCGGTTGGAC CGCCTACATT TCCATGACCG ACTGGCGTGG ACTGGCAATA TCCACGTCGT TCGTCGGGTT CGACAATTAC CTGACGATCT TCAGCACCGC GCGATTCCAG ACGAATATCC GCAACCTGAT CGTCTTTACG GTCTTCTTTC TGGCGTCTTG CCTGGTGATC GGGCTGTTAC TCGCGGTGCT CGTCGATGCA CGGGTGCGCT TCGAGGGGTT CTTTCGCTCG GTCTACATCT TCCCGATGGC GCTCTCGTTC ATCGTAACCG GCGTTGTCTG GCAATGGTTG TTTGCACCGG GCAACTGGCC CACTGATCCG ACCGGGATCA ACCTGCTGTT CAAGCAGTCG GGCTTTGGTT TTCTCCAGGC GGCATGGACG ACCGATACGA ACATTGTGCC GGGATGGCGC ATCGAAGGAT TACGCACCCG GATTGGCATC CCAATGGCGA TGATTCCGGT TGTTGTTGCG GCAGTCTGGC AGATGTCGGG GTTTGTGATG GCGATGTATC TGGCGGGTTT GCGCGGCATT CCAGAAGAAA TCAAAGAAGC GGCACGGGTC GATGGTGCGA CTGAGTGGCA GGTGTTTCGC ACTATTACGC TGCCGATGCT TCAGCCGATT ACATTGAGCG CCGTTATTAT TCTGGGGCAT ATTTCGCTGA AGATTTTCGA CCTGATCGTC ACGATGACCG GTGGCGCGCC CGGCAACAAT ACCGAGGTGC CCGGGTTGTA TATGTACGAA ATCACCTTCA AAGCCAACAA GTTCGCCGAA GGCGCAGCGG TGGCAATGGT GATGCTGGTC GTCGTCGCCG TGCTGGTGGT GCCGTATCTG ATCTATAACC GTCGAACAGA GGTGGAACGA TGA
|
Protein sequence | MRQAKTLSAH PARRVRWMNR DRAVALLMIA PSALAIAVFV YGFIGWTAYI SMTDWRGLAI STSFVGFDNY LTIFSTARFQ TNIRNLIVFT VFFLASCLVI GLLLAVLVDA RVRFEGFFRS VYIFPMALSF IVTGVVWQWL FAPGNWPTDP TGINLLFKQS GFGFLQAAWT TDTNIVPGWR IEGLRTRIGI PMAMIPVVVA AVWQMSGFVM AMYLAGLRGI PEEIKEAARV DGATEWQVFR TITLPMLQPI TLSAVIILGH ISLKIFDLIV TMTGGAPGNN TEVPGLYMYE ITFKANKFAE GAAVAMVMLV VVAVLVVPYL IYNRRTEVER
|
| |