| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1115 |
|---|
| Symbol | |
|---|
| ID | 5538581 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 1446961 |
|---|
| End bp | 1449102 |
|---|
| Gene Length | 2142 bp |
|---|
| Protein Length | 713 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640893249 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001431232 |
|---|
| Protein GI | 156741103 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.732014 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACACGT TCCGAAGATG TCAAGCCCAT ACGTTGCTGA GCATGGCAAG GATGCTGCTC
ATACTGAGTG TGCTCGTCTT CACGGTGGCG CCTTCGACGC CAATCGCTGC GGCACAGGCA
CAGACCGACG CGGACACCTA TCGCTTCGCC GATCTTGGCT ACGGCGACCG GACGGCGCGG
ACGATGTATG GCAATCTGGA CTATTTCTTT CCGGTTCCCG CAGGCGAAGA ACCACTCGAA
GGCGCGCGCC TGGACCTGGT ATACAGCCAC TCGCCGCTCC TCGACTCCGA ACGCTCGACA
ATGACCATTG TTGTTAATGG TCTGTCGGTT CAGAGTGTGC GCCTGACCTC CGACACACGC
GCGCGCGCGA CCCTGACCGT TCCGCTGCCA CTCTCGGTGT TCGGCGGCGA TGGGTTTTTC
GTCCAGGTGC GCTTTCATAT GCGCCTGACC CGTGATGAGT GCGAGGAGAC GCGCAATCCG
GCGCTGTGGG CCACTATCCA CGGCGACTCG CGGTTGACGC TGCCCACTCA ATCAATCAGT
GCGTATCGTC TCGATCAGTT CAACTGGTTG TTCGCGCCTC CTCCTGACCA TCGCCCGCCG
CTGGCGCTGG TCATTCCTGC CGAACCGTCG CCGGAAGAAC TCGAAGCCGC CGGGCTGGTC
GCTTTTCAAC TGGGGCGTCG GGCTGCCGCA ATCCGCGCCG AGCCCCGACT GGAGGTTTTC
ACGACGCCTC CCGACCGCGC CGGTGTCATC GTCGGTAGTG CTCCGGCGCT GGCAGCGATG
CTGCCGTGGG GCGTTGTCGA TTGGGATGGG CGCGCGGTGA CTATGGCGGG CATTCCGATC
TCGACCGATC ACGGTGTGCT GGCGCTGGCG GAGAGCAGCG TGCCGCGTCT GCTCGTCAGC
GGAGCGACGC CATCGGCAGT GCGCCTTGCT GCCCAAACGT TGAATGATCC TGACCGCCGC
ACATTACTGG ATGGCGCGTA TGTGGCAGTG ACCGATGCGC CGGTTGCTGC ACCTTCGTCG
TTGCCATGGG CGAATGGCGC TGCCAGTTTC GCCCAACTTG GCGTATCGTC CCGTACCGTC
ATTGGTCCCG GTGAGCACCG GATCGACCTG GCGTTCACCC GCCCCGCCGG TTGGCAGTTG
CATGATGGCA GCGTGTTGAC CCTCGATGTG GAGGCGACTC CGGCAGTGCG ACAAGAAACG
TCGTGGATCG CCGCCAGTGT CAACGGTATT GACCTGGGTG CGCAACCGCT TAAGTTGACA
GAACCCAACC CACATCGTTA TACGTTCGCG CTTCCCGCCG ATCTCTTGAC CGCCACGCTC
GACGGTAGAG CGGTGCGCTA TCTCGATCTG ACCGTGCGCC TGTTCCTCGA TCCGCCAGAG
ACAGGATGCG TGGTTGTTGA CGGCGATAGT TTGCGTGCAA CGTTGCTCCC CACTTCTGCC
TGGCGCCTTC CGCACAGCGT CAGTTCCGCC TTCGATCTGG GGCGTTTTCC CGCGCCGCTC
CTCAGTGTCG ATACCTCGCT GCCGTTGATC ATCGTGCTGC CGCAGCAACC TGCGGCGGCG
GAACGCGCCG TAGCGTTGCA ATTGTTGGCA GCGCTTGGAC GCTGGGCGGA TGCCGACGGC
TTGCCGCCGC CGCGCCTGGT CACCGTTGAT CAGGTGAATG AACGCAGTGG ACGCCATCTC
ATCCTGATTG GTGGGGCTGA GCGCAACACA CTGAGCGCCG AAGCCATCGC TCGCCAACCA
GATCGGTTCG CTGCCCGTCA AACGGTGGTG TATCGACCGA ATGAAACCGC TCAGGGACGC
CTGGTGTTGG GTCCTTCACC CTGGCAACGC GATGCCGGGG TGTTGATCAT CGACGGCGCT
ACGCCAGATG ATCTTGCTAT CGGCGTCACT GCGCTCGAAC GGCGCGAAAC GCTCGAACGA
CTGCGCGGTC CGGTCGCGCT GATACGGCAG GACGCTCCGC CGCAGACCGG TCCTGCCGCT
GCCGCACCGC CGTCCAGTCT GACGCCGCAG ATCGAAACGT CGCTCCTTGA GCGACTTGCG
GGATGGCAGA TCGCCGGGGC AGTTCTGCTT GGCGCATTCC TGAGCGCTCT CGTCATTCTG
CTGACCATTC AGGTGCGTGG TCGCACACGG CGGAGGGGAT GA
|
|---|
| Protein sequence | MHTFRRCQAH TLLSMARMLL ILSVLVFTVA PSTPIAAAQA QTDADTYRFA DLGYGDRTAR
TMYGNLDYFF PVPAGEEPLE GARLDLVYSH SPLLDSERST MTIVVNGLSV QSVRLTSDTR
ARATLTVPLP LSVFGGDGFF VQVRFHMRLT RDECEETRNP ALWATIHGDS RLTLPTQSIS
AYRLDQFNWL FAPPPDHRPP LALVIPAEPS PEELEAAGLV AFQLGRRAAA IRAEPRLEVF
TTPPDRAGVI VGSAPALAAM LPWGVVDWDG RAVTMAGIPI STDHGVLALA ESSVPRLLVS
GATPSAVRLA AQTLNDPDRR TLLDGAYVAV TDAPVAAPSS LPWANGAASF AQLGVSSRTV
IGPGEHRIDL AFTRPAGWQL HDGSVLTLDV EATPAVRQET SWIAASVNGI DLGAQPLKLT
EPNPHRYTFA LPADLLTATL DGRAVRYLDL TVRLFLDPPE TGCVVVDGDS LRATLLPTSA
WRLPHSVSSA FDLGRFPAPL LSVDTSLPLI IVLPQQPAAA ERAVALQLLA ALGRWADADG
LPPPRLVTVD QVNERSGRHL ILIGGAERNT LSAEAIARQP DRFAARQTVV YRPNETAQGR
LVLGPSPWQR DAGVLIIDGA TPDDLAIGVT ALERRETLER LRGPVALIRQ DAPPQTGPAA
AAPPSSLTPQ IETSLLERLA GWQIAGAVLL GAFLSALVIL LTIQVRGRTR RRG
|
|---|
| |