| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1069 |
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| Symbol | |
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| ID | 5538535 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 1387687 |
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| End bp | 1388193 |
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| Gene Length | 507 bp |
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| Protein Length | 168 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640893205 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_001431188 |
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| Protein GI | 156741059 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1388] FOG: LysM repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.1908 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCTGTCA AGACTGCACG ATCAATGAGC GCTTCCTGTT CCGCAATTAT CAACACTCAA
GCAATGCCTT GCTTATACCG TTCACTGCTT CTGATCAGCC TGGCAACAGG GATGACCGCA
TGTACGTTGC CAGCCTCGCC GCAACCGGTG ACCCCGCGCC CGACAGCGCC GGTTATTCTT
GAAATCACCC CTGCGCCAAC ACTGGATGCC GATGCAACGG CGACGGCATA CGCCAGCCTG
CTGGCGCCCT CACCAACGCC AAGCGGGCTC TACATCGTTC AACCCGGCGA CACCCTGAGC
GAACTGGCAA TCATGTTCGG CACAACCGTA GCCGACATAA TGGCAGCCAA TGGATTGACC
GATCCCGATT CGCTTCAGGT GGGGCAACCG CTGATCATTC CCTCGCTGAT TGACACCTCG
CCATCATTGC GCGCCACGCC GACCGGGGTT TCGGGGTTGG CGGAGGCGAC GCCGGCGCCC
GCCGCACCAA CGCTGGCGAC GCCATGA
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| Protein sequence | MPVKTARSMS ASCSAIINTQ AMPCLYRSLL LISLATGMTA CTLPASPQPV TPRPTAPVIL
EITPAPTLDA DATATAYASL LAPSPTPSGL YIVQPGDTLS ELAIMFGTTV ADIMAANGLT
DPDSLQVGQP LIIPSLIDTS PSLRATPTGV SGLAEATPAP AAPTLATP
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