Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1059 |
Symbol | |
ID | 5538525 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 1375556 |
End bp | 1376758 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640893195 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_001431178 |
Protein GI | 156741049 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.543295 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGCGT ATCTTGTTCG ACGCTTGATC CAGATGGTGA TTGTCACTGT CCTTTCGGCG ATGCTCGGCT ATTCGTTGTT GTACCTTGCG CCGGGAGGAC CATTGTTGTT TTTGCAGCAG ATGCAGAACA CCGGGCAGCG CCGGGTGACA GAAGAAGATA TTGCGCGCCT GAAAGCGCGG TATGAACTTG ACCTCTATTT GCCCATCCGC TTTACCCGCT GGCTGATCGG CTTCCCCGCC GGTCCAATCC AGGTCGGCGG CGTGAACCTG ATCTCGCCGG ATACAGTGGT TGGGTGCGCT ATCCCCGGTC AGGTGCGCCT GCGTTACCCC GATGGCACGG TCGAAATCCG GGAAGAAGGG TGTGTGCGTG ATGTGACCCT GGCAGACCTG GCCGAGCGCC GCACTAGCCG CGGTATTCTG TTCGGCGATT TCGGGTTATC GCAGCAGATC GCGCGCGACC GTCCGATCAG CGATCTGTTG ATGACCCGCT TGCCCTACAC GATCCAGTTG ATGGGCGTCT CGACGCTGCT GGCGATTCTG ATCGGTGTGC CGATCGGCAT CTATTCGGCG GTGCGCCAGT ATTCACGCTT CGACTATGCA ATGACCGGTA TTACGTTCGT TGGCTCGTCG CTGCCGACTC TCTTCATGGG TGTGATGGCG ATTCTGATCT TTTCGGTGCT GGCAAAGGAC GCCGGGTTGC CGTACCTGCC ATCCGGCGGT GCGCAGGGTA TTCGTAACTA CGATATTCCC TGGATTGGCA CGGTGCAGGC CGGTTCGACG CTGGATCGCA CCCTGCGCTT TATCATGCCG TGCGCGGTGT TGACTTTCTT CAATATCGCC GCCTGGAGCC GTTTCATTCG CTCCAGTATG CTCGAAGTGC TGCGGCAGGA TTATGTGCGC ACAGCGCGCG CCAAAGGCGT GCGGGAACGC GCGGTGATTA CCAAGCACGC GCTGCGCAAT GCGCTGATCC CGTTTGTGAC CCTGCTTGCG GGTGTGTTGC CGACGCTGGT GGCCGGCGCG GCGATTACCG AATCGGTGTT CAACTGGCCC GGCATGGGGC GATTGCTGGT CGATGCGCTG GGACGTAGCG ACTACACGGT GGCAATGGCG ATCCTGTTCA TCAGTACAGT TCTGGTGTTG ATCGGATATC TCATCTCCGA TATTCTGTAC ACGGTCGTCG ATCCGCGCAT CCGTCTCGCG TGA
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Protein sequence | MTAYLVRRLI QMVIVTVLSA MLGYSLLYLA PGGPLLFLQQ MQNTGQRRVT EEDIARLKAR YELDLYLPIR FTRWLIGFPA GPIQVGGVNL ISPDTVVGCA IPGQVRLRYP DGTVEIREEG CVRDVTLADL AERRTSRGIL FGDFGLSQQI ARDRPISDLL MTRLPYTIQL MGVSTLLAIL IGVPIGIYSA VRQYSRFDYA MTGITFVGSS LPTLFMGVMA ILIFSVLAKD AGLPYLPSGG AQGIRNYDIP WIGTVQAGST LDRTLRFIMP CAVLTFFNIA AWSRFIRSSM LEVLRQDYVR TARAKGVRER AVITKHALRN ALIPFVTLLA GVLPTLVAGA AITESVFNWP GMGRLLVDAL GRSDYTVAMA ILFISTVLVL IGYLISDILY TVVDPRIRLA
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