| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1030 |
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| Symbol | |
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| ID | 5538496 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 1343131 |
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| End bp | 1344615 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640893169 |
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| Product | sugar transferase |
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| Protein accession | YP_001431152 |
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| Protein GI | 156741023 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2148] Sugar transferases involved in lipopolysaccharide synthesis |
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| TIGRFAM ID | [TIGR03013] sugar transferase, PEP-CTERM system associated
[TIGR03025] exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCGAC GGGCTGCACT CAATACGGCA TCGCGTTCAC ACGCGATGCC ATTCCATCTG
CGATTGGAGA TTTCCGAGCG CCGGTTGTTG TTGCGCATCG GCGATCTGGC GCTAACGGCG
ATTGCTGTCT TCGGGGCGCT CTGGGTATGG GCGCGTCTGG CGGACCGCTC ACTGGATATG
GGATTGGTGC GAGAACAGAT CGGTTGGGTG GCGCTGATCG GCATTGGTTG GACCCTCTGG
ATGATGCTGG CAGACATGTA CAATCTGCGC CTCGTGGCGC GCGTTGGTCC CAGTATGCGT
CGGATCCTCC TCGGCGGTCT GGCGCTCCTC TTTGCTTACC TGATCCTGTT CTTCGTCTTG
TCGCGCGCAC CGGTCACCGG CATGCTCGCC GCAATCGAAA CTGGCGCGCC GCCGCTGCGC
TTTGCTCCGG CGCTCGCCAT TGTTGCCCTG GTTGTGTTAA TGGTCATCTG GCGGATGGCG
TATATTCGGG TGCTGGGAGC GCCACACGCG CGGCGACGTC TGCTCATCCT GGGAGCGGGT
CGGGCCGGTT CAATCCTGTC GCACGTCATT CTCAAGGGGC ACAGCCCGTA CTATGAGATC
GTCGGGTTTG TTGATGATAC GCCGCAGACA CGTTGTGCTC ACATCGGCAG TGTTCCGGTG
CTTGGCGGTG TCGATTGTCT TGGCGACGTC GTCTGGGAGC GGCGTGTCGA TGAGATTGTC
ATTGCCAGCG GCGAGGTGAG TGGCGAGGTG CTTCAGGTGT TGATGGATTG CTACGAAAAT
GGCGTTGCCA TCACGCCGAT GCCACTGCTC TATGAGCGAT TGACAGGAAA AATCGCTGTT
GAGCATGTTG GCAGTCAGTG GTATGTCGCA TTGCCGCTCC ACTCGCGCCC GACGCGCACC
GCCGAGGCGG TGATGAAGCG TCTGCTCGAC CTGTCCGGCG GTATCGTGCT GGTGGTGGCG
CTGCTGATTC TGTTGCCGTT CGTTGCGCTT GCCATTCGTC TCGACTCGCC GGGTCCGGTG
TTCCACCGAC AGCAGCGCGT TGGCTGGCGC GGCAAGCCGT TTACCGTGCT CAAGTTTCGC
TCGATGGTGC AGGACGCTGA GCCGGATGGG GAGGCGCAGT GGGCGACGAA GGACGACCCC
CGTGTCACCC GGGTTGGGCG CCTGTTGCGC CGTATGCGCC TCGATGAGTT GCCGCAGGCG
CTCAATGTGT TGCGCGGCGA GATGAGTCTG GTTGGTCCAC GCCCCGAACG ACCGGAGTTT
GTCGAACGAC TACAACAGAT CATTCCGTTC TATCGGGTGC GCCTGGCGGT CAAGCCGGGT
CTGACTGGAT GGGCGCAGAT CAACTATGGG TATGGCGATA GCGTGGAAGC GACCCTGAAC
AAACTTCAGT ATGACCTCTA CTATTTGAAA CATCAATCCT TCTGGTTCGA TCTCCTCATT
CTGGCGCGAA CGGTGCATGT GGTGCTGCGG ATGAAGGGGC AGTAG
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| Protein sequence | MNRRAALNTA SRSHAMPFHL RLEISERRLL LRIGDLALTA IAVFGALWVW ARLADRSLDM
GLVREQIGWV ALIGIGWTLW MMLADMYNLR LVARVGPSMR RILLGGLALL FAYLILFFVL
SRAPVTGMLA AIETGAPPLR FAPALAIVAL VVLMVIWRMA YIRVLGAPHA RRRLLILGAG
RAGSILSHVI LKGHSPYYEI VGFVDDTPQT RCAHIGSVPV LGGVDCLGDV VWERRVDEIV
IASGEVSGEV LQVLMDCYEN GVAITPMPLL YERLTGKIAV EHVGSQWYVA LPLHSRPTRT
AEAVMKRLLD LSGGIVLVVA LLILLPFVAL AIRLDSPGPV FHRQQRVGWR GKPFTVLKFR
SMVQDAEPDG EAQWATKDDP RVTRVGRLLR RMRLDELPQA LNVLRGEMSL VGPRPERPEF
VERLQQIIPF YRVRLAVKPG LTGWAQINYG YGDSVEATLN KLQYDLYYLK HQSFWFDLLI
LARTVHVVLR MKGQ
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