| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1010 |
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| Symbol | |
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| ID | 5538476 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 1320175 |
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| End bp | 1322754 |
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| Gene Length | 2580 bp |
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| Protein Length | 859 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640893153 |
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| Product | CRISPR-associated helicase Cas3 |
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| Protein accession | YP_001431136 |
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| Protein GI | 156741007 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1203] Predicted helicases |
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| TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.445271 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCTCT ATCCTTACCA AGAGCAAGTC AAATCACACT TGCTGAGCGG TTGTTCGGTG
GTGCTACAGG CGCCCACCGG TTCCGGCAAG ACGCGCGCCG CGCTGGCGCC GTTCATCGAG
GCGTTCTTCG ACCTGCCGGA CGACGCCTTC CCGAAGCAGT GTCTGTACTC GGTGCCCATG
CGCGTGCTGG CAAGCCAGTT CTACCGCGAG TACCGCACCC TGGCCGAACG CTACGAACGG
ATCCATCGCC GTGCGCTCGA CGTGCGCATC CAGACCGGAG AGCGGCCCGA GGACCCAGAG
TTGGTGGGCG ACCTGGTCTT TGCGACCCTC GACCAGACGC TGAGCAGCGC GCTGGGCGTG
CCCTACAGCC TTTCAACCGG TCGCGCCAAC CTAAACGTCG GCGCGGTGCT GGGTTCTTAC
CTGGTGTTCG ACGAGTTTCA CCTGTTTCCG CCAGAAGCGA CCCAGGCCAC GCTGCAGCTC
CTACGCCTGG TGGGGCGGCT GGCGCCTTTC CTGCTGATGA CGGCGACTTT CTCTCAGACC
ATGCTGGAGT CCATCGGCAA GCTGCTCGAT GCCGAAGTAG TCGTCGTGCC ACCCGATGAG
GTGGCAAGCA TCGAGACGCG ACAGGGTCAA CGGCCCCGCA AACAGCGCCG GTTCGAGGTG
GCGGATCAGG CGCTGGACGC CAAGGCGGTG CTGGCGGCCC ATGGCCGTCG CTCGCTGGCC
GTCTGCAACA CCGTGGACCG GGCCATCGCC CTGTATGAGC AGCTTCGGCA GGCGGGTTGT
CGGCCGGCGC CGGTGAGCGA TCCAACGCTG GCGCCGATCT ATCAGGCGCT GGCACAAGCC
CGCGGCGAGG AATGGGACAG GGCCGTCGCG CAAGGCGTGC AGATATTGCG AGAGCGCCTG
GCCGAGGGTG GGGAAGACAA ACCGTGGGTG ATGCTGCTGC ACAGCCGCTT CGAGCGACCG
CACCGCCAGC TCAAAGAGGC GCTGCTCCAG GCGCTTTGGA ATCCCCAGGG GTTGGAGGCC
GGCGGCGATC CCTCGCTCAT CGTCGTCGCC ACGCAGGTGG TCGAGGTGGG CCTGGACATC
AGCGCCCAGA CGCTGCACAC CGAGATCGCG CCGGCGGCCA GCGTGTTGCA GCGCGCCGGC
CGCTGTGCCC GCTATCCTGG TGAGCAGGGC CGGGTGATCG TCTATCCTGT GCCGGCCAAA
GAGAACGGCG AGCCGGACTA CGCGCCCTAC AGCAGCAAGG CCGAGGTCGC CGTGTGCGAC
CGCTCCTGGC AGGCGTTTCG CGAACGGCAG TGCGCCATCC TGGACTTCGC CGCCGAGCAG
GAGGTGATCA ACCAGGCTCA CAGCGAGGCC GACGCCGCGA TGCTTCAGGC CATGCAAGAG
GGCCAGGGCG AGCTCTGGCA GCGCATCACC GACGCGCTGG TGCGCGGGGA TGCCAGCGCC
CGGCCGCAAC TCATCCGCAA AGTGGACAGT CGCACCGTGA TCGTGTACGA GCCGCCCTTT
GGCCTCAGCG AGGAAAGCCC CTATCGCTTT CAGGGCATTT CGCTGTGGCA CGGCACCCTG
CGCGGCAAGT TGAAGGCGCT GAACCAGTTG CGGGGCGACC TGGGGCTGGA CTGGGCGGTG
CGTTACCCCG TTGCACACGG CGACGAGGAT GACGAATCAA TCACCTACAC TTGGAAGGAC
GCCCAGACAC CCGATGACAT CAGCCTCTCG CTGATCTTCG CCGTCCATCC CCGGCTGGCG
AGCTACGACG CCGAACACGG TCTGCGGCTG GGGGTAGCCT CCGCTGGCAG CTACACCTCG
CCCACCGCGA CCCTGCGCCG CCAGCGCCCC GACTACGCCG GCTATCAGCT CGAGTCGTAC
GCAGACCACA TCGCGGCCAT GCGCCGCGTC TTCGAGGGCG ATCCGACCTC CCGCATTCCG
CTGGCCAACG GCCGGCTGCG GCGACGGTTG GCCTGGCCGG CCCGTCGCTT CGCCGAACAG
GATGGGGATT GGCGCCTGCC GCAAGGTCTG CTGGAGCGGG CCGTGCGGCT GGGTTTTGCC
CTGCACGACG TAGGCAAGCT GAGCGAGGCG TGGCAGCGCT TCGCCGCCAA ATATCAGAAG
GCCATCGGCG AAGGCGCGCC GCCCTTCCTG GTCGCGCATA CTCACTATGA GCGCGGCAAC
CCGGCCCACG AGGAGGCACA GAAGAAGGTG CGTTGCTACA AGCCTTCCAC CCACGCCGGC
GAGAGCGCGT TCGCATCGGC CCAGCTACTG TACGAGGCAC TGGAAGGCCG CACCTATGCC
GGCCTCTACC GCGCCGCGTT TGCGGCCATC GCCCGCCATC ACAGCCCCGG CCTGGACAAA
GCCAACCCCT ATCGCCTGCA TCCCCGGGCC GGTGAGACGG TGGCCGAGGC GCTGGCGGTC
GTTGGCGACA CTAGCTGGCG GGACTGGGCA CAATGGTTGC GCTCCAAGGA GGAGGCGCCC
AACGTGCGCA AGCATCTGCC CGAAGCGCCG CCGGATGGCG ATTGGGCCTG GTGGTTTCAG
TACTTTATCA TCGTTCGCAT CTTACGGCTT TGCGACGGAC TGTCGCAGGA GGAGGGTTGA
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| Protein sequence | MALYPYQEQV KSHLLSGCSV VLQAPTGSGK TRAALAPFIE AFFDLPDDAF PKQCLYSVPM
RVLASQFYRE YRTLAERYER IHRRALDVRI QTGERPEDPE LVGDLVFATL DQTLSSALGV
PYSLSTGRAN LNVGAVLGSY LVFDEFHLFP PEATQATLQL LRLVGRLAPF LLMTATFSQT
MLESIGKLLD AEVVVVPPDE VASIETRQGQ RPRKQRRFEV ADQALDAKAV LAAHGRRSLA
VCNTVDRAIA LYEQLRQAGC RPAPVSDPTL APIYQALAQA RGEEWDRAVA QGVQILRERL
AEGGEDKPWV MLLHSRFERP HRQLKEALLQ ALWNPQGLEA GGDPSLIVVA TQVVEVGLDI
SAQTLHTEIA PAASVLQRAG RCARYPGEQG RVIVYPVPAK ENGEPDYAPY SSKAEVAVCD
RSWQAFRERQ CAILDFAAEQ EVINQAHSEA DAAMLQAMQE GQGELWQRIT DALVRGDASA
RPQLIRKVDS RTVIVYEPPF GLSEESPYRF QGISLWHGTL RGKLKALNQL RGDLGLDWAV
RYPVAHGDED DESITYTWKD AQTPDDISLS LIFAVHPRLA SYDAEHGLRL GVASAGSYTS
PTATLRRQRP DYAGYQLESY ADHIAAMRRV FEGDPTSRIP LANGRLRRRL AWPARRFAEQ
DGDWRLPQGL LERAVRLGFA LHDVGKLSEA WQRFAAKYQK AIGEGAPPFL VAHTHYERGN
PAHEEAQKKV RCYKPSTHAG ESAFASAQLL YEALEGRTYA GLYRAAFAAI ARHHSPGLDK
ANPYRLHPRA GETVAEALAV VGDTSWRDWA QWLRSKEEAP NVRKHLPEAP PDGDWAWWFQ
YFIIVRILRL CDGLSQEEG
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