| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0772 |
|---|
| Symbol | |
|---|
| ID | 5538238 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 1010446 |
|---|
| End bp | 1011912 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640892926 |
|---|
| Product | polysaccharide biosynthesis protein |
|---|
| Protein accession | YP_001430909 |
|---|
| Protein GI | 156740780 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.330011 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.358074 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCAG AAATTAAAGG ATTAATACTG ACATCTGTCA TATATGGTAT AGGCGATATA
CTACTAAAGG CATTTAATTT TTTCCTATTG CCGATATATA CACGACTATT AAATCCGTCT
GATTATGGTA TCCTAGCAGT GACTGGTTTT CTTTCATTTA TCATGTCTAT CTTTATGTCA
TTGAGCCTTC ATAGCTTTCT TACGCCATTG TACTTCTCTA CCGGCAATCA TCAAGAGCGT
AGAGAGAACA TCGGTTCACT CTTTCTACTG TCCATTCTCG TAGGTGGAGT GATTGCTCTG
TCCATTGATC AAGTAGCACG ACCTTTCTTT TCACTAGTAA TTCGGGATGT TCCCTTTGAT
CCGTATATTC GTTTGACTAT TTGGACATCT TATCTTTCTA CTTGGTCACG TATTCCTCTG
TTGTTATTGC GAGTCCGAGA ACGTAGCTTC GCCTATGTTC TTATTACGTT GTCTAGTTCG
TTGTTACAAA CAGTATTGTC AATTTGGTTC GTAGTCTATC TTAAGCGCGG TATTGAAGGT
TTGTTAATAG CTAACCTTAT CGCCACATCC GTTACATCTG TTATATGCCT GATCTCTGTA
TCGAGCAATA TGATTCTATC ACTCAAAGTG AAGATATGGA AGCATGCATT GATATTTTCT
CTACCCCTAA TACCTCATGA ACTTTCTGGG TGGATCCTTG AGCTTTCGGA CAGAGCTATT
TTACAGTGGT ATGTTTCGCT CGATCAGGTC GGAATATACT CATTAGCATA CTCTTATGGA
TCGCTCATTA CCTTGATCGG ATATGCAATG AACATGGCTT GGGTTCCATT TTTGCACAAG
ACGGACTCGA TTGAAGGAGA GAGAGCTTCA GAGCGTTTTT CATACATGGC AACATATTTT
ACTGTCACGC TCTGTTTTTT TGGATTATTT TTAGGATTGG CTGCAAAGCC AGTCATTAGC
CTAATAACTA CAGCACTTTT TCATGACGCG GGGGGGATCG CCCCCTTGAT CGTAGCAGCA
CTACTATTAT CGAATATTTA TTACTTCCCT GTCAACTTTA TATTCTTAAG AAGAAAAACC
ACAAAAGTCG CCTTTGCCAC TGTTGTTTCA TCCTTCACTA ACATTATCCT AAATTTGTGG
CTTATACCTG TGCATGGTGT TATAGCAGCA GCATGGACGA CATTTATTAG TTATGGTGTT
ATGACCCTGC TAACTTGGTA TTTTTCATTG AAAGTGTATC CAATCTTTTA TCAATATAGG
AGGTTGATGG TTGTTTTTTT GATCAGCGCA TTCCTATGGG TAATTGGAGT TGTTTATCCT
TGGAACAGTT TTTGGTTCGA GATAATGGGT AAGCTTGTTT TATTGGCTGC TTTTCCCGCT
TTGCTGATAA TTTTTGGTTT CTTTACAGAG AAGGAAAAGT CCTATTTAAG GTTAGCCCTA
AGAAGCTATC CAATATTCCA ACGGTAA
|
|---|
| Protein sequence | MKSEIKGLIL TSVIYGIGDI LLKAFNFFLL PIYTRLLNPS DYGILAVTGF LSFIMSIFMS
LSLHSFLTPL YFSTGNHQER RENIGSLFLL SILVGGVIAL SIDQVARPFF SLVIRDVPFD
PYIRLTIWTS YLSTWSRIPL LLLRVRERSF AYVLITLSSS LLQTVLSIWF VVYLKRGIEG
LLIANLIATS VTSVICLISV SSNMILSLKV KIWKHALIFS LPLIPHELSG WILELSDRAI
LQWYVSLDQV GIYSLAYSYG SLITLIGYAM NMAWVPFLHK TDSIEGERAS ERFSYMATYF
TVTLCFFGLF LGLAAKPVIS LITTALFHDA GGIAPLIVAA LLLSNIYYFP VNFIFLRRKT
TKVAFATVVS SFTNIILNLW LIPVHGVIAA AWTTFISYGV MTLLTWYFSL KVYPIFYQYR
RLMVVFLISA FLWVIGVVYP WNSFWFEIMG KLVLLAAFPA LLIIFGFFTE KEKSYLRLAL
RSYPIFQR
|
|---|
| |