| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0754 |
|---|
| Symbol | |
|---|
| ID | 5538220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 988285 |
|---|
| End bp | 989406 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640892910 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001430893 |
|---|
| Protein GI | 156740764 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.110422 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAAGC CTAACGATCA TCGCGCTGCA CGACGTCTGA TGATCATGAC TGCCACCGGC
TTCCTTGTCG CAACGCTGAT CGTTATCAGC CGGGAAAGCG GCGCCGACTT CGCCCAAGAT
TATGCCGCAG CATGGGCGTG GTGGCATGGT ATGGATCCTG GCACACCGAC CTTTCTCATC
TTCGAGGCCT GTTGTCCAGA GGATAACGTC ACCGGCGCTT ATCAGACGGC GCATCCGCCT
TTTGCGACCA TGATCGTGTT GCCATTTGGT CTTCTTCCAT TCAAGACGGC GCGCGCGATC
TGGCTTCTCA TCGGCAGTTT TTCGATCGTG ATCGCATGGC GCTACGCTCA GGTTGACCAT
AAAATGGCTT TGGCTACGGC GTCTATGTGG GTGATAGGTC TGTCATTGGG GTCATTGGAA
CCGATCGTTC TCCTGGCGCT GGCTATAGCG CTTCGCATGA GATCATCTCG TGCAAACGTA
TCGGCAGTAC TCATAGGAGT AACTGCCGCG ATCAAGATTT ATCCAGGGAT ATTGCTTCTC
GCACTGTTGA TCGCTCGCCG CTGGAAGGAA GGAGCATCGG GCGTTCTGGC AGCGCTTATA
GCAACACTTG TTGCCGATAG ACTTGTGGGA GGGGATGCGC TCGCTGACTG GATTGCATAT
ATTCCCTGGA ATATCGAACG CTACATTGCT TCTGCCGGAA ACGCGTCGGC GGTTCGATTG
GTGAGTCTGG TGTTTCCTGA TATTCCAACA TCGCTATTAT CTCTTGGGAT GATTTTGGCC
TTGTTAGCGC CGATTGCGCC GTATCTCTAT CGTTATCGTA GCGGGGACTG GCGAACACTA
CTGCCGGTTA TGATACTTGG CAGTCCGCTG GTCGGACCAC ACTATATCGC ATGTGTCGGT
CTTGCGTATT CCAACCGCGT GGCTGCATAC TTCCTCGGCA TCGGTGGCGG CATTTCGTTG
CTCGCGCGTA TTGGTCTTTT TCCCCTTTCT TACGAAACCG AAGCGTTCAT TGTCGCGCCA
ATGCTGGCAG GACTGTTCAT CCTCTGGCTG GAAGCCATCC GTCGTATGAT CGTGCAGCAT
TATCCTATTG CCCGAAAAAA GAGCACGTCA GATGTCCGCT GA
|
|---|
| Protein sequence | MPKPNDHRAA RRLMIMTATG FLVATLIVIS RESGADFAQD YAAAWAWWHG MDPGTPTFLI
FEACCPEDNV TGAYQTAHPP FATMIVLPFG LLPFKTARAI WLLIGSFSIV IAWRYAQVDH
KMALATASMW VIGLSLGSLE PIVLLALAIA LRMRSSRANV SAVLIGVTAA IKIYPGILLL
ALLIARRWKE GASGVLAALI ATLVADRLVG GDALADWIAY IPWNIERYIA SAGNASAVRL
VSLVFPDIPT SLLSLGMILA LLAPIAPYLY RYRSGDWRTL LPVMILGSPL VGPHYIACVG
LAYSNRVAAY FLGIGGGISL LARIGLFPLS YETEAFIVAP MLAGLFILWL EAIRRMIVQH
YPIARKKSTS DVR
|
|---|
| |