| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0652 |
|---|
| Symbol | |
|---|
| ID | 5538115 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 858656 |
|---|
| End bp | 859657 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640892809 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001430795 |
|---|
| Protein GI | 156740666 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3064] Membrane protein involved in colicin uptake |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCATC CCACCATTCA TCCTCATCCG GCGCCCGAGA CGCCGCCTAC CGATGACCCG
TTCCGCTACG GCTGGCGCTA CGTACCCCGC CCGACTGCCG ATGACCCCCA TCATTTCGAT
CAGGTCCCGC TCACGCTGGA AGATGTCCTG CACCCTCAGG AGGGCGATCA GGTGCTCTGC
AATTACGATC ATCAGCGGCG CGTCCACTAT CTGACGGATG TCTTTCTCGC CCGCACCGCC
GACCGTCCTG ATGCCGTCGT GCTGAGCGAC GTGCGCATCG CCTGGGACGT GCCGGAACTG
AAGGCGCATG GACCGGACAT CATGGTCATC TTCGGCGTGC GACGCATTCG CAACTGGAGC
ACCTTCGACG TGGCGCAGGA AGGGGTGCGC CCGACGCTGA TCGTCGAAGT GACCTCGCCG
GAGACACGCA CACTCGACCT GAACGAGAAG GTGGCGCACT ATGCAATGGC AGGCGTACCG
TGGTACGTGA TTGTGGACGC AGTTGAACAA CGTGGCAAGT CACTGTTGCG CGTGCTCGGC
TACGAGATCA CAAACGGGGC GTATCGTTCG CTGATTCCAA ATGCGCAGGG GTGGGTGTGG
CTGGCGCCGT TGCGGGTCTG GATCGGGGTC GAGGACAACG AGCTGTACTG CTACGATGAG
CAGGAGCGGC GGATGGGGGA TTACGCGACG TTGACGACGA TCGTGATCGA GACGGAAGAA
AAGATGGCGG AAGTGCTGGC ACGCGCCAAA GCGGAGGCGC GGGCGCGGAT GGAAGCGGAA
GCTCAGGCGT ATGCAGAAGC GGCAGCCCGC GCCGCCGCCG AAGAGCAAGC CCGGCGCGAA
GCCGCCGCCC GCGCCGCAGA AGCGGCAGCC CGCGCCGCCG CCGAAGAGCA AGCCCGGCGC
GAAGCCGCCG CCCGCGCCGC AGAAGCGGCA GCCCGCGCCG CCGCCGAAGA GCGACTGCGC
GCACTCGAAG AAGAACTGCG CCGTTTGCGT GGCGAGGGGT AA
|
|---|
| Protein sequence | MTHPTIHPHP APETPPTDDP FRYGWRYVPR PTADDPHHFD QVPLTLEDVL HPQEGDQVLC
NYDHQRRVHY LTDVFLARTA DRPDAVVLSD VRIAWDVPEL KAHGPDIMVI FGVRRIRNWS
TFDVAQEGVR PTLIVEVTSP ETRTLDLNEK VAHYAMAGVP WYVIVDAVEQ RGKSLLRVLG
YEITNGAYRS LIPNAQGWVW LAPLRVWIGV EDNELYCYDE QERRMGDYAT LTTIVIETEE
KMAEVLARAK AEARARMEAE AQAYAEAAAR AAAEEQARRE AAARAAEAAA RAAAEEQARR
EAAARAAEAA ARAAAEERLR ALEEELRRLR GEG
|
|---|
| |