Gene Rcas_0345 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0345 
Symbol 
ID5537807 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp427400 
End bp428119 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content58% 
IMG OID640892508 
Producthypothetical protein 
Protein accessionYP_001430495 
Protein GI156740366 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.1908 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGATCG GAAAGACCTT CAGTTTCGTG ACCGAGGACG AACAGTGGAT TACGAAGGTG 
CTGATCGGCG CTTTGATCCC TCTGATACCG ATTGTGGGAA CGTTCGCCGT TCAGGGGTAT
TCGTACCGTG TGGCGCAAAA TGTGGCGCGC GGCAACCCGC GTCCGCTCCC GGCATGGGGG
GAATTCGGCG ATCTTCTGAA GACGGGCTTT ATGGCGTTTG TGATCCAGTT CGTCTATGTG
TTGCCGGTGG CGATTATCTA TGGAATCTTC GTGGCGCTTA CTATTGCTGC CGCAGCGATT
TCAGGCGAGT CGGAGGGGGG GGCGGCGTTT GTTGGATTGC TCAGTCTCTG TTTCCTCCCG
CTGATCTTTA TCGCCGCGAT TGTGTGCGGT TTTGCCGCGT TGGCGGCAAT CATGCGCTAT
CTGGCAACCG ATTCGTTCGG CGAGGCGTTC AAATTCGGCG AGGTTCTCGC CATGCTGCGC
AATCATATCG GCGTGTTCCT GATGATCCTG GTTGTAGGCA TCATCGCCGG TGTTGTTGCG
GGTTTGGGCG CCATTGCGTG CGGCATCGGC GTGCTGTTCA CCGCATTCTA TGCGCAGTGT
ATGATCGGGC ATGCGGTTGG TCAGGCGATG CAGCGCATCT TCCCGGCGCA GCAACCGGTC
TATGCTGCGC CAGGCTACTA CGGACCGCCG CCGGGCTATG GTCCGCCGCC ATCGTACTGA
 
Protein sequence
MEIGKTFSFV TEDEQWITKV LIGALIPLIP IVGTFAVQGY SYRVAQNVAR GNPRPLPAWG 
EFGDLLKTGF MAFVIQFVYV LPVAIIYGIF VALTIAAAAI SGESEGGAAF VGLLSLCFLP
LIFIAAIVCG FAALAAIMRY LATDSFGEAF KFGEVLAMLR NHIGVFLMIL VVGIIAGVVA
GLGAIACGIG VLFTAFYAQC MIGHAVGQAM QRIFPAQQPV YAAPGYYGPP PGYGPPPSY