| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0316 |
|---|
| Symbol | |
|---|
| ID | 5537778 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 390242 |
|---|
| End bp | 390718 |
|---|
| Gene Length | 477 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640892480 |
|---|
| Product | Mov34/MPN/PAD-1 family protein |
|---|
| Protein accession | YP_001430467 |
|---|
| Protein GI | 156740338 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1310] Predicted metal-dependent protease of the PAD1/JAB1 superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.12023 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGATCG TTCTTCCTGA GCACATGCGG ATCGCCATCG CGCGGCATGC GGAAGAGACT
TATCCTGACG AGTGCGTTGG GTTGCTCTTG GGGCGGATCG ATGGATCGCG CATGGAAGTA
GAGGACGTCT TCCCGGCGCC CAATCGATGG ACGGTTGACG TGGGGTTGAC GCCAACCGAT
GCGGATCATT CCCTGCGCGA CCGCTTCTAC CTCGATCCGC GCGATTATCT GCGCGCTGAA
CGCATGGCGC GCGAGCGCAA CCTCGATGTC GTTGGGTGCT ATCACTCGCA TCCCGACCAT
CCGGCAATCC CGTCGCCGCG CGACCTGACC GGCGCGCAGG GCATTGGCGG TGGTTCGCAG
TTCGCATTCC TCATTCAGAG CGTGCGCGAA GGGCGTGCTG CCGAATTGAC CGCCTGGACG
CTGGATGATG CCGGAATGCG CTTTGTGCCT GAGGAGACGG TTGAACGCCT CCGGTAG
|
|---|
| Protein sequence | MMIVLPEHMR IAIARHAEET YPDECVGLLL GRIDGSRMEV EDVFPAPNRW TVDVGLTPTD
ADHSLRDRFY LDPRDYLRAE RMARERNLDV VGCYHSHPDH PAIPSPRDLT GAQGIGGGSQ
FAFLIQSVRE GRAAELTAWT LDDAGMRFVP EETVERLR
|
|---|
| |