| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0293 |
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| Symbol | |
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| ID | 5537755 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 363141 |
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| End bp | 366632 |
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| Gene Length | 3492 bp |
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| Protein Length | 1163 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640892457 |
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| Product | NHL repeat-containing protein |
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| Protein accession | YP_001430444 |
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| Protein GI | 156740315 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4745] Predicted membrane-bound mannosyltransferase |
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| TIGRFAM ID | [TIGR03663] conserved hypothetical protein TIGR03663 |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.368653 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAATAC TTTCACGTGA TCCCCGCGAT GTCGCCGCAG CGCATGCCGG GCTGGACCGT
CCGTTGAGCC TGACGTGGTT GTCGAGCGAT GTGCTGCTGT TGGCGTTGCT GCTGGTCGCC
AGCGTGATTG CGCACCTGTA TGGATTGGAG CGCATGGCGC TCCATCACGA CGAGTCGATC
CACGCCTGGA TGAGCTGGAA GTTCTACACC GGCGCGGGCG GCTTCATCTG CTGGGGCGGG
CGCTCCTCGG CGACCTACTG CTACGACCCG GTGTATCACG GACCATCGCT CTATGTGCTC
ACCCTCTTCT CCTATTTTCT GTTCGGTGAC GGCGATATGC AGGCGCGCCT GCCGCAAGCG
GCGGCTGGTA TTGCGCTCGT CGCCTCCGCC TGGATGCTGC GCCCCTATCT GGGAACACGC
GGCGCATTGC TGGCAGGCGT GTTGCTGGCA TTCACGCCGA CGCTGCTCTA CTACACCCGA
TTCGCCCGTC ACGATGGATT AATGGTGCTG TGGACCCTCT GGATCGTTAT TGGCTTCTTC
CGCTACCTCG ACACTGCGCA ACCGCGCTAT CTGTACCTGC TGGCGGTCGG CATCGCACTG
GCGCTGGCAA CCCACGAACT CTACTACATC CTGGGGTTCA TCTTTGGCTG GTTTCTGATC
ATCCGGGTGC TGTACGAACT GCTGCCACGT CGCACGATGA CAATTGCGCT GGGCAGCATT
GCCGGCGTTG CAGCACTAGT CGAGTTGAGC ATCATTACCG GGCTGTGGTA TGGGCGCCTG
ACGCCGACGC TGCGCGCCGA CGGCATTTCG CTCCTCTTCT TTACGGTTGC CAGCGGCGGG
CTGATCATGT CGCGCGTGTG GGATCCGACA CCGCTGTGTG TGCCGCGCTT CGTCGCACTC
TGGCAGGAGC AGCGCACGGT ACTCTGGGTG GCGCTCGGTA TGCTGGCATC GATCTTTGTT
GTGCTCTACA GCGCCTTCTT CGCCGATATG CAGAGCGTCT TCGCCGGGTT GTACGCCGGT
CTGGCATACT GGCTCGGATC GCAGCAGGAA TTTGCGCGCG GCGATCAGCC ATGGTACTAC
TACCTGATGT TAATGTCGCT CTATGAGCCG CTGGCGTTCT TCGGCGGTCT GACGGCGACG
GTTTACCTGT TCACCCGTGG TGTGCGCTTC CATCGCCAGA AGCAGCCTGC TGCGAATCGG
GAGGATACGC CATCGGACAA CGACATCAAC GTTGCCGGGC TTACGCCGGA TGGCGCGAAC
ACGCCATCGG GCAACGACAT CAACATTGCC GGGCTTGCGC CGGATAGCGC GGATACGCAC
ATGTCGTTCA TCGGGCGTCC GGCGACTGCG CTGTTTCCGC TGTTTCTCGC CTTCTGGTTC
CTCTGCTCAT TCGTGGCATT CTCATGGGCG GGTGAGAAGA TGCCATGGCT CAATGCGCAT
ATCGCACTGC CCGCCAACCT GCTGCTGGCC TGGGCGCTGG CGCGGTTGGG CGCAAGCCTG
AACTGGCGCG ACCTCGACCG CCGCGCATGG CTCGCGCCGC CGGCGCTGAC ACTGCTGTTC
ATTGCGCTTG CCGTCGCTTC CTGGCGTTTC GGTCAATCTG CGGTTGGGCA GCAGGCGCAG
ACGAATCTGC TCCAGGGCGT CTTGCTGCTT GCGCTGGCAG GCGGATTGAT CTCCCTGATC
GTCCGCGTCG GTCAATGGGC TGGTGTGCGA GCGACCCTGG CTCTCTGCGC GCTGACCGTT
GCAGCGCTGG TGGGTGCGTA TACGTTGCGC GCCACATGGC TGGTCGTCTA TGACCACCCG
GATACGCCGG TCGAACCGAT GATCTATACC CAGAGCACAC CCGACATTCC GCTGATCGTC
GCGCAAATCC GCGACCTGGC GATCAGTCAG ACGCGCAATG CGCGCGGTGT GAACGACCCA
ACCGGTGGTC TGTCGATGCC ACTGATCATG GATCGCGGCG ATCCGGCGCA GGATGGCGAG
GGAAGCCTGG CATGGCCCTA TCAGTGGTAT CTGCGCGACT TCACACGCCT GGAGACGCGC
TCCTCCGATG ATTTCCGTTC TGCGACATCC GATACCTTTC TCGTCGATCC GCCGCAAGGC
GCCGGTGAGC GCATTCTGGC GCCGGTGGTG CTGGTGTCGC GCGTGAGTCT GAATAGCACG
GCGCAGCAGG CGCTCGAAGC GAGTTATGTG CGCCTGTACG ACACCAAACT GAACTGGTGG
TTTCCCGAAG GAAACAAATG CGACCCGCAA AGTGCCGGTT ACAAACGCTT CTACTTCGCC
TATCCGGGCA GCGCCGGAGA TATTGCGAAA GCATGCCCCG GCTTGCAACC ACAGGACGCG
CCGCCGGTCT GGGCGCCGAT CTTCTGGATT TTCGATAGTT CCCATTGGGC AAACACCGGA
CAGTACCTGC TCTATCGGGA ACTGCCGCCG CCGCTGCGCC TTGACGGGCG CGAAATGTCG
GTGTGGGTGC GGCGCGACCT CGCGCGCGTC GGTGATGCAC CCGCTGTCGC TGCAACCGGC
AGCGTCATCA AACTCGTGGC AACCGACATC TTCGGCGAAT TCGGCAGTGA ACCCGGGCAA
CTCATCCAAC CGCGCGGCGT GGCGGTCGAT CCGCAGGGGA ACGTCATCGT GTCGGACAGC
GGCAATCACC GTCTGATCGT CTTCGATCCG TCGGGGACGC CGATCCGCAC TATTGGCGGT
TTCGGCAACG GCGATGGACA GTTCTACGAA CCGCGCGGCG TAGCCGTCGA TGCCGCCGGA
AACATGTACG TCGCCGATAC CTGGAATGCA CGGATCGTCA AACTCGACCC GCAGGGAAGG
TTCCTCTCCA GTTGGGGCGT CGGGCGCGAA GATTTTGGCG ATGGTCGACG CGCGTCGCCG
ACCGGCGGCT CGCAGGAACA GAACCTTGCC CGACCGCTTG ACTTCTTCGG TCCGCGCGGG
GTAGCCGTCG ATGCCGAAGG GAATGTCTAT ATCGCAGACA CCGGCAACAA ACGCATTGTA
GTCACCGATA GCGACGGCAA TTACCAGTAT CAGTGGGGCT ACGACGGAAG CGCCGCCGGG
CAGTTCAACG AACCAATCGG CGTAGCCGTC GATGAGAATG GCACTGTGTT CGTCGCTGAT
ACATGGAACA GCCGGGTGCA GGCGTTTGCG CGTGGCGAAG ATGGACGAGT CGATCCGTTA
CCCTACGCCA CCTGGCGCGT TCCTGGCTGG CAACCGCAGA CCTATGAGGA CCCCTTTATT
GCTGCACGGG GCGGGCGGGT CATCGTCAGC GTACCCGTGC GCAACCTGCT GACGCTGACA
GACGACAACG GCGTAGGGTT GCTGACGTGG GGAGGAAGCG GCAACGACGC CGCATCGGTC
AACCTGCCGT GCGGCGTGGC GTTCGCCCCC GACGGCTCGG TGGTGGTCGT GGATCGGGGG
AATGTGCGAA TGATGCGCTT CGCCCTGCCG AACGTGGCGT CGCCTGTATC GAACGACGTT
CCACTGCAAT AG
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| Protein sequence | MAILSRDPRD VAAAHAGLDR PLSLTWLSSD VLLLALLLVA SVIAHLYGLE RMALHHDESI
HAWMSWKFYT GAGGFICWGG RSSATYCYDP VYHGPSLYVL TLFSYFLFGD GDMQARLPQA
AAGIALVASA WMLRPYLGTR GALLAGVLLA FTPTLLYYTR FARHDGLMVL WTLWIVIGFF
RYLDTAQPRY LYLLAVGIAL ALATHELYYI LGFIFGWFLI IRVLYELLPR RTMTIALGSI
AGVAALVELS IITGLWYGRL TPTLRADGIS LLFFTVASGG LIMSRVWDPT PLCVPRFVAL
WQEQRTVLWV ALGMLASIFV VLYSAFFADM QSVFAGLYAG LAYWLGSQQE FARGDQPWYY
YLMLMSLYEP LAFFGGLTAT VYLFTRGVRF HRQKQPAANR EDTPSDNDIN VAGLTPDGAN
TPSGNDINIA GLAPDSADTH MSFIGRPATA LFPLFLAFWF LCSFVAFSWA GEKMPWLNAH
IALPANLLLA WALARLGASL NWRDLDRRAW LAPPALTLLF IALAVASWRF GQSAVGQQAQ
TNLLQGVLLL ALAGGLISLI VRVGQWAGVR ATLALCALTV AALVGAYTLR ATWLVVYDHP
DTPVEPMIYT QSTPDIPLIV AQIRDLAISQ TRNARGVNDP TGGLSMPLIM DRGDPAQDGE
GSLAWPYQWY LRDFTRLETR SSDDFRSATS DTFLVDPPQG AGERILAPVV LVSRVSLNST
AQQALEASYV RLYDTKLNWW FPEGNKCDPQ SAGYKRFYFA YPGSAGDIAK ACPGLQPQDA
PPVWAPIFWI FDSSHWANTG QYLLYRELPP PLRLDGREMS VWVRRDLARV GDAPAVAATG
SVIKLVATDI FGEFGSEPGQ LIQPRGVAVD PQGNVIVSDS GNHRLIVFDP SGTPIRTIGG
FGNGDGQFYE PRGVAVDAAG NMYVADTWNA RIVKLDPQGR FLSSWGVGRE DFGDGRRASP
TGGSQEQNLA RPLDFFGPRG VAVDAEGNVY IADTGNKRIV VTDSDGNYQY QWGYDGSAAG
QFNEPIGVAV DENGTVFVAD TWNSRVQAFA RGEDGRVDPL PYATWRVPGW QPQTYEDPFI
AARGGRVIVS VPVRNLLTLT DDNGVGLLTW GGSGNDAASV NLPCGVAFAP DGSVVVVDRG
NVRMMRFALP NVASPVSNDV PLQ
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