Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_0256 |
Symbol | |
ID | 5537718 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 313588 |
End bp | 315546 |
Gene Length | 1959 bp |
Protein Length | 652 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640892420 |
Product | DNA primase |
Protein accession | YP_001430407 |
Protein GI | 156740278 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0358] DNA primase (bacterial type) |
TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.230248 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.131007 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCCGGCG TTACCGATCA GATCAAAGAA AAGATCGATA TTGTCGATTT CATTTCCGCC TATGTGCCAT TGCGAAAGAC GGGGCGCAGT TATGTCGGCT TCTGCCCGTT CCATCCCAAC ACCCGCACAC CGGCGTTTCA CGTCTTTCCC GACACCCAAA GTTTTCACTG TTTCGGTTGC AAAGCGTCGG GGACTATCTT CGACTTTCTC ATGCGGCGCG AGGGGATAGA GTTCCGCGAA GCGCTCGAAC GCCTGGCACA GCGCGCTGGC GTGCAGTTGC ATCCGCGCAC CGAAGCCGAA GAGCAACAGG ATCGGCTGCG CACCCGCCTG CTGGAAGTGA ATGCAGCCGC AGCCGCGTTC TTTCGCCACA TGCTGGTGAA GTCGCAACGC GGCGAGGAGG CGCGCGCATA TGTCGCCAAA CGGCGCATTG ACGACGCGAC CGGTGAAGCG TTCCTGATCG GCTACGCTCC CGACGACTGG AGTTTGTTGC TCTCCTATCT GACCGAACGG CGCGGCTTTG CACCGGAAGA AATCGAAGCC GCCGGTCTGG CGATCCATCA CGAAACCCGT GGGTATTACG ACCGGTTCCG CCATCGGCTC ATGTTCCCGA TTCGCTCCGC GAGCGGCGAG ATTGTGGCGT TTGGCGGCAG GGCGTTGGGA GATGTGCAAC CGAAGTATAT GAACTCGCCG CAAACACCGC TCTTCGACAA GGGCAAGGTC TTGTACGGGC TTGACCTGGC GCGCGATGCA ATCCGCCAGA GCGACGCCGC GGTGATCGTG GAGGGGTACG TCGATGTGAT TATTGCCCAT CAGTATGGGT TTCGCAATGT CGTTGCGCCG CTCGGCACGG CGTTGACCGC CGATCACGTG GCGCTGGTGA AGAAACTCTC GCACCGGGTG TATCTGGCGC TCGACGCCGA CACCGCCGGC GCGCGCGCGA CGCTCAAGGG GTTGCAGGCG CTCCAGAGCC AACCGGAGGG TGAATTGACC GCGGTCATCT CGCCGCAGGG GGTGATCGCG CTGCAACGCC GCCAGGATGT CGAGATCAGA ATCCTGGCGC TCCCCGAAGG CAAAGACCCC GATGAGGTCA TTCAGGAAAA TCCGGAGCAG TGGCGCGCGG CGCTGGCAGC GGCGCGCCCG GCAATGGATT TTTATATCGA GACGCTGACA TCCGACCTTG ATCTGTCGAG CGGGCGTGGG AGAGCGGAGG CTGTCGAACG AATAGCGCCG CTCCTCACAC AGATCGCCAA TCCGGTTGAG CAGGCGCACT ACATTCAGCA ACTGGCACGA CTGATCGATA TCGAGGAAGC GCATATCCTC GCAGCGTTGA GCAATAAGGC GCGCCAGGAA GGGCAGCGCC GTCCGTCGGA TCAGGGACGC GCGACAAAGG TTCTGGAACA GCAACCTGGC GACGCAAACC AGCAACCCGA TGAAACCCCG CCGCCTCCAA CGCAAGAGGA GTATTTGTTG AGTTGGATTA TTCGCTACCC GACTGCGCGC GCTGCCGTGG AGGAGAAACT TCATCGCGAT CTGGCGACGT ATCCGGCATT GCAATCGCTT ATGAGCGGAA CCATCGACGA GTTGTTCACT TCTGATGAAT GCCGCGCACT GTGGCGCGCC TGGATCGCCG CCCCCACCGG GAGCGACCCG CAGGCGTGGG CGACGACTCT GTATGCGCCG CTCGACGCGG TGGCGCAGCG TGTGCTGGAG TTGCACGCAC CACAACCTCA GGCGTATCGG ATTGTCAACG ATGCACTGGA ATGTGCTACA ATCCTTCAGC GCGATGCTGC AAAACGCTGG CTCGTCCAGA TCGCGCGCAT GCAGACGGCA GCGACCGGTG AAGCAGAACA GGAAATCCTG CTCGACCAAC TGGTGCAGGT CAAACAGTTT ATCAATATGT TGAGCATCCC ACGCCGGAGC TCAGCATATG CCGACCTGCA TGTCCTGCAT ATGCCCTGA
|
Protein sequence | MPGVTDQIKE KIDIVDFISA YVPLRKTGRS YVGFCPFHPN TRTPAFHVFP DTQSFHCFGC KASGTIFDFL MRREGIEFRE ALERLAQRAG VQLHPRTEAE EQQDRLRTRL LEVNAAAAAF FRHMLVKSQR GEEARAYVAK RRIDDATGEA FLIGYAPDDW SLLLSYLTER RGFAPEEIEA AGLAIHHETR GYYDRFRHRL MFPIRSASGE IVAFGGRALG DVQPKYMNSP QTPLFDKGKV LYGLDLARDA IRQSDAAVIV EGYVDVIIAH QYGFRNVVAP LGTALTADHV ALVKKLSHRV YLALDADTAG ARATLKGLQA LQSQPEGELT AVISPQGVIA LQRRQDVEIR ILALPEGKDP DEVIQENPEQ WRAALAAARP AMDFYIETLT SDLDLSSGRG RAEAVERIAP LLTQIANPVE QAHYIQQLAR LIDIEEAHIL AALSNKARQE GQRRPSDQGR ATKVLEQQPG DANQQPDETP PPPTQEEYLL SWIIRYPTAR AAVEEKLHRD LATYPALQSL MSGTIDELFT SDECRALWRA WIAAPTGSDP QAWATTLYAP LDAVAQRVLE LHAPQPQAYR IVNDALECAT ILQRDAAKRW LVQIARMQTA ATGEAEQEIL LDQLVQVKQF INMLSIPRRS SAYADLHVLH MP
|
| |