| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0215 |
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| Symbol | |
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| ID | 5537677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 265160 |
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| End bp | 271948 |
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| Gene Length | 6789 bp |
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| Protein Length | 2262 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640892379 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001430366 |
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| Protein GI | 156740237 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0297822 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGTGC AACTCGCTGG CTGGGCGCAT CGTTACCTGG AGGCGCTTTG CGGTCAATCG
AACTTCAGCG CCGCGCGGAC TGTCGCACCC CTCTGGTTGG CGACCGATGC CGCTCATACG
CCCGAAGTGG GAGTCCCTGT CTCCGCGCCA CTGACGATTC AAATGGCAGC GGAAATCTTC
CCGCGCCTGG CGCTGATCGG TCCGGCAGGC GCCGGTAAAA CAACAAGCCT GCGGGCGCTG
GCTATCGGGC TGGCAGAAGC GTTCCTTTCG GGCAATAGTC GCACGGCATG GAGCGGCGCA
CATGCCCCTC TTCCACTCTA CATCGAGCTG GCGCGTTTCC GGGGAAGCAT CGAAGCAACA
CTGGCGGACA CATTCGGCAT TGGAGCGCCG CCGCCGCTCG ACGAACTGGC GCGCGATCGT
CCGCTGCTCT TCCTGCTCGA TGGGCTGGAC GAACTTCCGC CAGCCACACA GCTCACCGGT
CTGGCGGCAC TGAGCCACAC CCTGGCAGCG ACCGGCGCTC AGACGCGCTG GATCAGTACG
TGTCGCAGCG AGTATCTGGG GCTGTTCCGC CCCTGGCTGA ACGGCGCTGA GGTGCGTGTG
CTGCAACCGC TCCGTCCGCG CGATGTCGTT GCGCAACTGC AACGTCAGGT CGGCGATGGG
GCGGCTGCCT GGATTCAGCG CAACGACGAT ATTCTGCAAC TGGCGACTCG ACCGCGCTGG
CTCACGGCGC TGATCGAAGC GCGTGAGGCG CTGAATGCGC CCATTCAGAG CCGCGGACGG
CTTCTGGCAA CCTGGATGCC CGCGCTTGTG ACAACAGCGC TGGCAGCGCA TCCGCGCTCG
ATCCCGGCAT CACAGGCTGT ACATGCACTC ACGACCATTG CTCACCTTCT CGAACACCAG
GGGCAGACCG AACTCACGCT CGACAGTGCA ATCACGGCCA TCGAAGTAAG CGCCTATGTG
TCCGATACTC AGGTTACAGC GCGTGCGCTG CGTCAATCAC CATTGGTGCA CGAACGAACG
CTGCGCGCCG CAACCGGCGA AGCCGCGATT CTGGCATTGA TCGATGCCGG TATTCTGAAC
TTCGATGCCG AACGACGACT GATCGGCTTC CATCATCCCC TGTTGCGTTC TTTTGCCCAG
GCGCTGCTGC TGGCGCGCAC ACGCCCCGAT CAGTGGTCCG CTTCCATTCT GAGCCGCACT
TGGACGGATG CCGTGATCTT CGCCTACAGC CTGTCCGAGG ATCGTGAGGC GGTGGTGCGG
CGCCTGCTGG CTTCTGGCGC CGTTGGGTTG ACGGCGCGCT GCCTGATCGA CGCAGAAGCG
CCCGCGCACT ACGACGAACT GCTCGAGCGC AGCGGCTCCC TGACGCCACC GTTGCGAGTG
ATGATCGCCG ACGCGTTTGC TGCCGAGGGT CTGGATCGCG CAGCGTTGGA GCAACTGGAG
CGCGCCGGCA ACGAAGGGTA CGACGAAGCC GGGCTGTTCG GTCGCCTGGG CGATCTCTAC
TGCCGATCCG GTCAGTGGCG GCTGGCGCGC GTCGCTTATG AGCAGGCGCT GGCGCGCGAA
GCCGACGATC TGCGCTACCG GCAGCAACTC GGGGTCGTAT GCAGCCGGAT GGGTGAGCTG
GAACAGGCGG CGGCAGCGCT GGAAACGGTG CTCGATGCGC AGCAAAAGCG TTCGGCAGCC
GCTGCGCACG AATTAGGACA CGTCTATCTC CAACAGGGTC GCTTCGCGCG GGCGCTGGAG
GCATATCGCC ACGCGGCACA GCAACAACCT GGCGAACCGG CATATCGGCG TAGTGTGGCG
GTCGCGCTGC GCCGTCTGGG GCGTCTCGAG GAAGCGGAAG CGGAACTGCG CGACCTGATC
GCCGCATCTG GCAGTGATGC GGCGACGTAT GCAGAACTCG GCGAGGTCTA TGCCGACGCC
GGGCATAACG CGAAAGCGGT CGAGAGTTAT GCGCGCGCCG TTGCCCTGCG CCCCGATGAC
CCGATGCTCT ATGCGCGTCT GGGGCAGGTG CGTCGCAGCA TTGGCGACTG GTCCGGCGCG
CGCGCTGCAT TGCAACGCGC AGTGGAACTC GATTCCTCGA ACGCTGCGTT GCAGGATGAA
TTGGGACAGG CGCTCGAAGC ATGCGGTGAA ATGGAGAGCG CGCTGGCAGC ATACCGCGCG
GCGGTCTCGC TCGATCCGCA ATGTGCCACA TATCATCGTC GTTTGGGAGC GCTCCTGCGC
AATTGCGGCG ACAATGACGG CGCTGCGGCG GCGCTGCGCA CGGCGCTCGA ATTGCGCCCG
GACAGCGCCG CGACCTATGG CGAACTGGCA GAACTTTTGT GGCGTACCGG TGACACCGAT
CAGGCGCTCG ACGCCTATCG ACGTGCGCAC GCTCTCGCGC CGGAATCCCC CGATCACACG
CGCGCGTTGG GTCTGGCATA CCGCCGCCTT GGACGATCAC GCGACGCCGA ACGCCTCCTG
CGCCAGGCGC TGACGTTGGC GCCTGAACGC GCCGATCTCC ACTACGACTA TGGCATCGCT
GCTGAAGCCC TCGAACAGTG GGACACGGCG CTTGCAGCAT ATGAACAGGC AGCGATGCTC
GATCCGCAAT GCGCCGACTA TGCGCGCGCC GCCGGTGCGC TTCTCCTGCG GCGCGGCGAT
CTGGCGCGGG CACGTTCATT GCTGGCGGTC GCCCTGCGGC GCGCGCGCCG TGATCCCGAA
ACGTTGTTTC AGGTGGGAAT GCTCCATGCG GCTGCCGGCG CCTGGCATCT GGCGGCGCGT
TCTTTCCAAC GCGCGGCGCG CTTGAGTGGC AGCGCACAGC ACGAAAGCGC ACTTGGCAGG
GCGTACCTGC ACCTGAGTAT GGCAGACGAA GCATGCGCCG CTTTTGAGCG CGCACTCCTT
CTGCACCCCG ACGACATCGA AACACTCGAC GCCTACCAGA CGGCGCTAGA GTCATGCGGT
CGTCTCGAAG CGGCTTACTC CGTTGGGCGG CGTGTTGCGC GTCTGGCGCC AGGGAATGCG
GCGATCCAGC AGCGCGTCGG CAGTCTGGCG TTGCGCCTGG GGCGCGTGAA CGAGGCGCTC
GAACTGCTCG ACCGTGCAGT GGCGCTCGAC TCGCGCCTGG TCGCGGCACA TCTGGATCGA
AGCCGGGCGC TCCTCGCGGC AGGACGGGCA GAGGCAGCAC TGGCAGCCGC ACAACAGGCG
CATACCCTTG CTCCTGATCA GGCGCTTCCC CTGGCGCTGG CAGCCGAGGC GCTCATCACC
CTTCGGCGTG ATGACGAAGC GCGCCCATTG CTGGAACGAG CGCTGGCGCT CGATGCCACG
CTGCTGTCTT CCTGTGTTGC GCTGCGCGAC CTGCTGGCGC GTGCTGACGA CTATGCTGCG
GCTGTGAGCC TGGCACAGCG CGCTGTAGCG CTTGCACCCG CCGATATCTC CCATCACGTG
CGGTTGGGCG AGTTGCTCCT GGAAACAGGC GACCTGACAC AGGCGGAACA GGCGCTGCAA
TACGCACTTC AATATATCGC CAGCGTCGAC GAAGAGCAGC GTAACCGGAT GAGCGCTCGC
ATTTATGCAC TAATCAGCCG CATTCGCGCC CGCATCGCCG ATTGGGAACA GGCGGTTGCG
TATGCGCGTG CAAGCGTCGA TTGCGCTCCG GGCAACAGCG AGTATCGTGC ATTGCTCGCC
GATGCTCTGG AAGGCGCCGG CAACCTCGCA GCGGCAGTCG CAGAACTGGA AAGCGCCGCT
GCTGCCGAAC CCGACCGCAT CGACTGGCAG CAGCGTCTAG GGCATTTCCT GTATCGCATC
GGCAACTACT CAGGGGCGCT GAATGCACTG CGCCGCGCAG CTGCGGGGTC CGGCGCCGCC
GAGGACTACT ATGCGCTCGG CAGGTGTCTG TGTGCGCTCA GCGATCTTCC GGCTGCCGCC
GAAGCGCTCG AACAGGCGTT GCGCCTGCGC CCCGACGCCG CATCCTGGCG CGTCGAACTG
GCGCTGGTGC ATCTGGAACG CGGCTGGCAT GGCGAAGCCC TGGCGGAACT TAACCAGGCG
GTTGCAACCG CCCCTGATCG GACAGAGGTG CGACGCGCCC GCGCTCGTGC GCTGATGGCA
ATTGGCCAAC TCGACCACGC GCGCGCCGAT CTTGTCGAGG CGTTGCGGCG TGAACCACGC
GACGCCGAAA GTTATGCGTT ACTCGCCGAA ATCCTGCTCG ATCTCGGTCA TACCCTCCAG
GCGCTCGATA GCGCCCGACG CGCTGCAACG CTGCAACCCG ACAATCCGCA GTATCGGCGC
ATGCTGGCGC GCGCGCTGCG CGCCAGCGGT CGACGCGCAG AAGCCATCGA ACACCTCAGC
GGCGTTGTGA ATGATACCAG CCCGCCGCAG TGGTGGGAAG AACTTGCCGA TGATCACCTG
GCGCTGGGTC ATCTTCCTGC TGCGCGCATC GCACTCGAAC ACGCCGTTGC CGCTGCACCC
GATCAGGCGA CGACGCGCTT TCGCCTTGGC GACGTGCTGC TGCGGCTTGG CGAACCCGCC
GCTGCGACAG AACAATTACG CATCGCCATT ACCCGCCGGC CCGATTACGC TGCTGCACAT
GCTCGTCTTG CAGAAGCGTT GATTGCGAGT GCGATCGACA GCCCCGATCA TCTTGCTGCT
GCGGTCGAAG CAGCGCGCCT CGCCGTAGCG GTGGAGGGTC AATGCGCCGA CCATTGGCGA
GTGCTCGGCG CCGTGTTGCG CATGCAGGGG GTTCTGGAAG ACGCTGTTCA GGCATTGCGC
CGCGCCTGCG AACTCGATCC CGAATCGGCG TCTGCCGCAT TCCTGCTTGG ATTGACATTG
CTTGAACAGA ACAATCCGGC AGCCGCCATC GCACCACTCG CAGATGCGGT TGCGTTAGCG
CCTGAGATCG CGTCGCACCA CGGATGCCTG GGAATCGCCC ACCGTCTGGC AGTCGCACCA
ATTGTCGAGC CTGACGACTT GCGCACAGCG CCGCCCAATC GGCGCGCAGC GCTGACGATC
GCGCGGCGGT CGTTCCAGCA GGCGATCACC CTTGACCCGC GCTGCGCTCG CTGGTGGTAC
GAACTTGGAC TGACGGAACA GCAGTCTGCC AATCATGCTC CCGCTGTCGA AGCATTCGCG
CGCGCTATGG CGCTGGCGGA TGATCACGCT GTCAGTATGA CAACCGGTGT CTACCCTCCG
CTGCAGGGCA GCGAACGGAT CGCCATCCTG CGCAGCCGCG CACTGTCGCT CTATCTGGTC
GGTCGCCTCG ACGATGCGCG CGCCGATCTT GAATCGGTGA TTGCTCACAA TGCTGCGCTT
CCGGCAGACC GGTATCTGCT GGGTCGGGTT CTTCTCGATT GTGGTCATGC CACAGCAGCA
CGCACGGAAC TGACTAGTGC CACCGCCAGC GATCCACGGC ACGCTCAGGC ACACCTGTTT
CTCGGACGCG CCTGCCTGGC ATTGAATGAA CCTCAGACGG CGATTGACGC CATCGAACAG
GCTGCCGAAC TGCGCCCCGA TCATGCGCCA ACCGCTGCCG CCCTCAGCCA GGCATACGCG
GCAGCCGGTC GACGCGAACG TGCAATTGCC GCCGCACAAC GCGCCGTCCG GCTCGACTCC
TCGGCAGGCG AGCATCATCA CCTGCTTGCC ACACTCTATG CCGCCAGCGG ACGCCTCCAG
GAAGCGCGCG CTGCTCTGAT CAATGCCCTG ACCCTGCAAC CCGACGTTGC CGCATGGCAT
GCGCAAATGG GAGACATCTG CCAGCGCATG GGGATGATCG ACGCGGCGCG TAGCGCCTAT
GCGCGCGCCG TGCAACTGGC GCCCGACCAT GCCGATTACC GGTATGCGCA GGCGCGCCTG
TTGCGCCAGC AGGGACGCAT CGACGAGGCG CGCCAGGTGT TTGAAAAAGC GTTGGAGCAC
GAACCGCAGC AGGGCGCCTG GCACTACGAA CTGGCCGAAC TCCTCCGCCA ACAGCGCGAC
CCGGCAGCCA TCGAACATTA TGCCGCCGCC GTCCAACTCG CGCCCGACGA GCCGCGCCAT
TGGCTGGGGC TGGTCGAAGG ACTGCTGGAG CGTCAGGAGC GCGACGCGGC GCAGGAAACC
GTCGAGCGAG CGCTCCTGCG GTTTGGCGAC CATGCTGCGC TGCACGCGGT TGCCGGTGCG
CTTCAGGAGG AGCAGGGCGA AATCGAGCGG GCAGCGTGGC ACTACGAGCA GGCGCTCACG
CGCGACCCGC AGAACGCTAC CTATTGCTGG CGGTTGGGAC GCGCTCAATT CGAACTGGGC
AACCCGGACG CCGCCCGTGA GTTGCTCGAA CGGGCATTGG CGCTCGATCC CGGCTCGGCA
GACGCGCATG CAACCATCGC GCGCCTCTTC GCATCCGAAA ACGATAGCCG CGCTGCTCTT
GTTCACAGCC AGCGCGCCGT AGAACTGCGC CCTGACGATC CCGCGCTTCA GATTCAACTG
GCAGAGGTTC TTGCGCAGAT GCGACGCTTT GATGAGGCGC GCCAGGCGCT CGAGCGCGCA
GTGCAACGCG CGCCGTCCGA TCCCGAACTA CTGGCGCGCT ACGGTGAGAT GGCGCTGACG
GTCGGGTTGT ATCACGAAGC ACTTGGCGCA TTCGAGCGCG CCATTGCGCA GCGCCCCGAC
GAACCACGGT ACCACTTCTT CGCCGGGCGC GCGCATCGCC GACTGAAACA GTACAGCCGA
GCCATTGAGC GGTTCCGCCG CGCCGTCAAA CTCCGTCCCG GCTACAGCGA GGCGGTGATT
GAACTCAGCA CCCTCGGACC GCTGGCGTTT GTGGCGCAAC ATTTGCGTGG CGAGAGTGAT
GCTGCATAG
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| Protein sequence | MAVQLAGWAH RYLEALCGQS NFSAARTVAP LWLATDAAHT PEVGVPVSAP LTIQMAAEIF
PRLALIGPAG AGKTTSLRAL AIGLAEAFLS GNSRTAWSGA HAPLPLYIEL ARFRGSIEAT
LADTFGIGAP PPLDELARDR PLLFLLDGLD ELPPATQLTG LAALSHTLAA TGAQTRWIST
CRSEYLGLFR PWLNGAEVRV LQPLRPRDVV AQLQRQVGDG AAAWIQRNDD ILQLATRPRW
LTALIEAREA LNAPIQSRGR LLATWMPALV TTALAAHPRS IPASQAVHAL TTIAHLLEHQ
GQTELTLDSA ITAIEVSAYV SDTQVTARAL RQSPLVHERT LRAATGEAAI LALIDAGILN
FDAERRLIGF HHPLLRSFAQ ALLLARTRPD QWSASILSRT WTDAVIFAYS LSEDREAVVR
RLLASGAVGL TARCLIDAEA PAHYDELLER SGSLTPPLRV MIADAFAAEG LDRAALEQLE
RAGNEGYDEA GLFGRLGDLY CRSGQWRLAR VAYEQALARE ADDLRYRQQL GVVCSRMGEL
EQAAAALETV LDAQQKRSAA AAHELGHVYL QQGRFARALE AYRHAAQQQP GEPAYRRSVA
VALRRLGRLE EAEAELRDLI AASGSDAATY AELGEVYADA GHNAKAVESY ARAVALRPDD
PMLYARLGQV RRSIGDWSGA RAALQRAVEL DSSNAALQDE LGQALEACGE MESALAAYRA
AVSLDPQCAT YHRRLGALLR NCGDNDGAAA ALRTALELRP DSAATYGELA ELLWRTGDTD
QALDAYRRAH ALAPESPDHT RALGLAYRRL GRSRDAERLL RQALTLAPER ADLHYDYGIA
AEALEQWDTA LAAYEQAAML DPQCADYARA AGALLLRRGD LARARSLLAV ALRRARRDPE
TLFQVGMLHA AAGAWHLAAR SFQRAARLSG SAQHESALGR AYLHLSMADE ACAAFERALL
LHPDDIETLD AYQTALESCG RLEAAYSVGR RVARLAPGNA AIQQRVGSLA LRLGRVNEAL
ELLDRAVALD SRLVAAHLDR SRALLAAGRA EAALAAAQQA HTLAPDQALP LALAAEALIT
LRRDDEARPL LERALALDAT LLSSCVALRD LLARADDYAA AVSLAQRAVA LAPADISHHV
RLGELLLETG DLTQAEQALQ YALQYIASVD EEQRNRMSAR IYALISRIRA RIADWEQAVA
YARASVDCAP GNSEYRALLA DALEGAGNLA AAVAELESAA AAEPDRIDWQ QRLGHFLYRI
GNYSGALNAL RRAAAGSGAA EDYYALGRCL CALSDLPAAA EALEQALRLR PDAASWRVEL
ALVHLERGWH GEALAELNQA VATAPDRTEV RRARARALMA IGQLDHARAD LVEALRREPR
DAESYALLAE ILLDLGHTLQ ALDSARRAAT LQPDNPQYRR MLARALRASG RRAEAIEHLS
GVVNDTSPPQ WWEELADDHL ALGHLPAARI ALEHAVAAAP DQATTRFRLG DVLLRLGEPA
AATEQLRIAI TRRPDYAAAH ARLAEALIAS AIDSPDHLAA AVEAARLAVA VEGQCADHWR
VLGAVLRMQG VLEDAVQALR RACELDPESA SAAFLLGLTL LEQNNPAAAI APLADAVALA
PEIASHHGCL GIAHRLAVAP IVEPDDLRTA PPNRRAALTI ARRSFQQAIT LDPRCARWWY
ELGLTEQQSA NHAPAVEAFA RAMALADDHA VSMTTGVYPP LQGSERIAIL RSRALSLYLV
GRLDDARADL ESVIAHNAAL PADRYLLGRV LLDCGHATAA RTELTSATAS DPRHAQAHLF
LGRACLALNE PQTAIDAIEQ AAELRPDHAP TAAALSQAYA AAGRRERAIA AAQRAVRLDS
SAGEHHHLLA TLYAASGRLQ EARAALINAL TLQPDVAAWH AQMGDICQRM GMIDAARSAY
ARAVQLAPDH ADYRYAQARL LRQQGRIDEA RQVFEKALEH EPQQGAWHYE LAELLRQQRD
PAAIEHYAAA VQLAPDEPRH WLGLVEGLLE RQERDAAQET VERALLRFGD HAALHAVAGA
LQEEQGEIER AAWHYEQALT RDPQNATYCW RLGRAQFELG NPDAARELLE RALALDPGSA
DAHATIARLF ASENDSRAAL VHSQRAVELR PDDPALQIQL AEVLAQMRRF DEARQALERA
VQRAPSDPEL LARYGEMALT VGLYHEALGA FERAIAQRPD EPRYHFFAGR AHRRLKQYSR
AIERFRRAVK LRPGYSEAVI ELSTLGPLAF VAQHLRGESD AA
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