| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0117 |
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| Symbol | |
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| ID | 5537577 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 139673 |
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| End bp | 141034 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640892282 |
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| Product | aminotransferase class-III |
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| Protein accession | YP_001430271 |
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| Protein GI | 156740142 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
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| TIGRFAM ID | [TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.457647 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGCCA CGCCAACACG CAGCATCATC CTCCGCACCA CGATCCCGGG ACCGCGTTCG
CGCGAACTGC TTGAACGACG CGCAGCAGCA GTGCCGAACG GTCTCTACAA AGCGCATCAG
ATCGCCATCG AAAGCGCCTC AGGCGCGCTG GTGACGGATG TCGACGGCAA CACGTTCATC
GATTTTGTCG GCGGAATCGG CGTGCTGAAC GCCGGTCACT GCCCGCCGTC GGTCGTCGCG
GCGATTCAGG AGCAAGCAGC GAAACTGATC CACTTTTCGG CGCTCGTCGG GACGTATGAG
CCGTATATTG CGCTGTGCGA ACGGCTCAAT GCACTTGCGC CGATCAGTGG TCCCTGTAAG
ACGATCCTGT CGAACAGCGG CGCCGAAGGA GTTGAAAACG CTATCAAAAT CGCCCGCGCC
GCGACCGGTC GCCAGGCGAT CATTGCGTTC GAAGGGGCGT ACCACGGGCG CACATTGCTG
ACGCTCACGC TCACCAGCAA GTACACGTTC AAAAAGACCT TCGGACCGTT TGCGCCCGAA
GTGTACCGCG CACCGTTTCC CGCTGCTTAC CGGATGGGGG TGAGCGAGGA AGAAGCGGTC
GAACGTTGCT GGGAAGCATT CGAGCGCATC CTGGTGGCGC ACGTAGGTCC AGAAGCGATC
GCGGCGGTTA TCATCGAGCC GGTGCAGGGC GAAGGCGGAT TTATCCCGAC GCCACGCGAG
TTCATGCGAC GCCTGCGCGA TTTCTGCACG CGCAACGGAA GCATCCTGAT CGCCGATGAG
GTGCAGTGTG GCTTCGGGCG CACCGGTACA CTGTTTGCCA TGGAGCAGAT GGCGGTCGAA
CCGGATATCC TGGTCAGCGC CAAGTCGATT GCCGCCGGGA TGCCGCTCGC TGCGACGACC
GGGCGCGCAG CGATCATGGA CAAAGCGCAC ATCGGCGGTA TTGGCGGCAC CTATGGCGGC
AACCCGCTGG CATGTGTCGC GGCGCTCGAA GTGGTGAGGA TGTTCGACGA TGGCGAACTG
CTGCGCCGGG CGAAGCAGAT CGGCGCAATA GTGCGTGAGC GTGGCGCGAT CTGGCTGCGC
GACATTCCGC TGGTCGGTAA TGTGCGCGGG TTGGGCGCGA TGCTGGCGAT CGAATTGGTC
AAAGACCGCG CCACCCGCGC ACCGGCAGCC GATGAGGTGC TGGAGGTGGT GCAGTACTGC
GCCGAACATG GAGTGCTCAC CATGCGCGCC GGGCTGTACG CCAACTGCAT CCGCCTGCTC
ATGCCGCTGG TTATCACCGA CGATCAGTTG CACGAAGGAC TCGATGTGCT GGAGGAGGCG
CTGCACGTGG TTGCGCAACA GAAAGGAGGA GGGCATGGCT GA
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| Protein sequence | MTATPTRSII LRTTIPGPRS RELLERRAAA VPNGLYKAHQ IAIESASGAL VTDVDGNTFI
DFVGGIGVLN AGHCPPSVVA AIQEQAAKLI HFSALVGTYE PYIALCERLN ALAPISGPCK
TILSNSGAEG VENAIKIARA ATGRQAIIAF EGAYHGRTLL TLTLTSKYTF KKTFGPFAPE
VYRAPFPAAY RMGVSEEEAV ERCWEAFERI LVAHVGPEAI AAVIIEPVQG EGGFIPTPRE
FMRRLRDFCT RNGSILIADE VQCGFGRTGT LFAMEQMAVE PDILVSAKSI AAGMPLAATT
GRAAIMDKAH IGGIGGTYGG NPLACVAALE VVRMFDDGEL LRRAKQIGAI VRERGAIWLR
DIPLVGNVRG LGAMLAIELV KDRATRAPAA DEVLEVVQYC AEHGVLTMRA GLYANCIRLL
MPLVITDDQL HEGLDVLEEA LHVVAQQKGG GHG
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