Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_0047 |
Symbol | |
ID | 5537505 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 62261 |
End bp | 63205 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640892212 |
Product | integrase family protein |
Protein accession | YP_001430203 |
Protein GI | 156740074 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.456307 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGAAC AGGTCGAAGC GTTTCTGCGC CATCTTGCGG ATGAACGCAA TCTTTCCGCC AATACGATAG CAGCGTATCG CACGGATCTG GAGCAGTTTT GTGAGTTTCT GCACGGGAGG CGTCTGTTCG CATGGCACGA TGTAACGCAC GATGATGTGC TCGCGTTTCT GATCGATCTT CGTGAACGTC GATACGCCTC CTCGACTGTG GCGCGCAGAG TCGCTGCGGT GAAGTCGTTC TTTACGTTTC TGACCGGGCG TGGGATTGTG CAGCGCGACC CTACCGAGCG TATCGACTCG CCAAAGGTTG ATCGCGATCT GCCGCGCGCT CTGACGCCGC GCCAGGTCGA TGAATTGCTG GAATTGCCGT TGCGCTCGCC AACGCCAGAG CGCATCCGCG ATAAGGCGAT GCTCGAATTG CTCTATGCTA CCGGTGTGCG CGTGAGCGAA TTGGTGGCAT TGAATGTGAA CGACGTCGAT CTGGAGCGGA ACGAAGTGCG TTGCATCGGC AAGAATGGGC GGGTGCGCGT CCTGCCGATC AACGGGTCGG CGGCAACGGC GCTGGAAGAA TACTTCGACA TCAGTCGCAA TCAACTGGCT CGCGGCAGTG GGTCGTCAAC CGAAGCGCTG TTCCTCAACC ATCGCGGCAA ACGCCTGACG CGCCAGGGGT TCTGGTTGAT ACTCAAGCAG TACGCCGAAG AATTGGGGTT GAGCGATCTG ACGCCTCACG TGCTGCGGCA TTCGTTTGCC GTGCATATGC TCAATGCCGG TTTTGATCTG CGCGCGGTGC AGGAGTTGCT GGGGCACACA TCGATTTCGA CCACTCAAAT CTATACCCAT CTCAATCACG AGTCGTCGCA CACACCGCAT GCACATCCTG CCCCGCGCGC CAGCGAAGTC AACGGTGTGC GGGACGAGCA GGCGCTCGTG CCAGAAGAAA AGTAA
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Protein sequence | MNEQVEAFLR HLADERNLSA NTIAAYRTDL EQFCEFLHGR RLFAWHDVTH DDVLAFLIDL RERRYASSTV ARRVAAVKSF FTFLTGRGIV QRDPTERIDS PKVDRDLPRA LTPRQVDELL ELPLRSPTPE RIRDKAMLEL LYATGVRVSE LVALNVNDVD LERNEVRCIG KNGRVRVLPI NGSAATALEE YFDISRNQLA RGSGSSTEAL FLNHRGKRLT RQGFWLILKQ YAEELGLSDL TPHVLRHSFA VHMLNAGFDL RAVQELLGHT SISTTQIYTH LNHESSHTPH AHPAPRASEV NGVRDEQALV PEEK
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