| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0035 |
|---|
| Symbol | |
|---|
| ID | 5537493 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 46943 |
|---|
| End bp | 48208 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640892201 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001430192 |
|---|
| Protein GI | 156740063 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3934] Endo-beta-mannanase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACGA ATGACACCTT TTCGTTAGGC GTGACCTACT GGCCGCGTCG AGCGGGTCCG
TTGCTCTGGC AGCGCTACGA CCGCGGCGCG GTGCGTGAAG AACTGGCGCA CATCGCTGCC
ATCGGCTTCG ATACGGTGCG CTTCTGCGTG CTGTGGGAAG ATTTCCAGCC TGGTCCTGAG
CGGATCAATG GTCGCGCGAT GCGGCGCCTG GAGCACGCAC TCGATACGGC GCACGCCGTT
GGATTGCGGG TTGTTCTGGC GCTCTTTCCG GTGGCTCTGC TTGGTCAGTT GCAGGTCCCA
TCGTGGGCGA ACGGTCCAGA CATTGCCGGC GCGTTGCGGC GCGCCCGGCG CGGCCAACCG
CTGATGCTCG TGCGTCCGCC GGGAGTAATC TCCGTCCTGA CCGGCGGACG GTATCGCCCG
GTGCAGTGCG GTGATTTGTT CAGCGATCCG ACGATGATCG AGGCGCAACG TTATCTGGTG
CGTGAAACCG GTGGCTACTT CGGCGACCAT CCGGCGGTTC TGGCGTGGCA ACTCGGCGAA
GGGTTCGAGC GTGTTCATCG CCCGGAGTCG GAACAGGCAG TATCGCAGTG GTTTGCCCTT
CTAACGGATG AACTGAAAAT CGTGGCGCCG CGCGCCGTCT GTCTGGGTGT CGTCTCCCCC
ACAGGGTTGA AACGCCGCTC CGGTCCGCGC CCGGAGCATG TGGCGAAGCA CTGTGCGCTC
ACAGGTGTGA CCGTTGATCT GGCGGAAACG CCGGTGGACC ATCAGGCGCG ACACACGAAC
CCCGCCGCCT ATCTGCATAG ACTGACTGCC GGTCTGGCTG AACGACGGGT TGTTGTGCTT
GGCGTCGGGA TGCCGACGAT TACGCACGGT GAAACTGCCG GATGGTTCGA GGACGATCTC
TACGGACGAA CGGCGCCGGT GTACCGGAGT ACGCCCGGAG AACAAGCAGA GTTCATCCAC
ACGGTTCTGG AACGTCTCTA CGATGACGGC GCCGCTGGCG CGTGGCTGGC AACCTATGCC
GATTTTCTTG AAGAACTATG GCAGGCGCCG CCGCTCGATC GCACCCGCTG CTATCGGACC
ATGGGACTGA TTGATGCACT GGGACGGGAG AAAGCGTCGG TCGAAGCCGT GCGCGAGTTC
GCTCGCCGCG TCCGCAGTGC ATCGACTCTG CCTGCACAAC CGCCTGCGGT TGATGCCGAG
CGCTACTGGA GCGACCCGGA GCGCACATTC CGCGAGTGGT GGCGCGAGTT CAACAGCAGC
GGATAA
|
|---|
| Protein sequence | MTTNDTFSLG VTYWPRRAGP LLWQRYDRGA VREELAHIAA IGFDTVRFCV LWEDFQPGPE
RINGRAMRRL EHALDTAHAV GLRVVLALFP VALLGQLQVP SWANGPDIAG ALRRARRGQP
LMLVRPPGVI SVLTGGRYRP VQCGDLFSDP TMIEAQRYLV RETGGYFGDH PAVLAWQLGE
GFERVHRPES EQAVSQWFAL LTDELKIVAP RAVCLGVVSP TGLKRRSGPR PEHVAKHCAL
TGVTVDLAET PVDHQARHTN PAAYLHRLTA GLAERRVVVL GVGMPTITHG ETAGWFEDDL
YGRTAPVYRS TPGEQAEFIH TVLERLYDDG AAGAWLATYA DFLEELWQAP PLDRTRCYRT
MGLIDALGRE KASVEAVREF ARRVRSASTL PAQPPAVDAE RYWSDPERTF REWWREFNSS
G
|
|---|
| |