Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_0023 |
Symbol | |
ID | 5537480 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 28504 |
End bp | 30525 |
Gene Length | 2022 bp |
Protein Length | 673 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640892188 |
Product | sodium/hydrogen exchanger |
Protein accession | YP_001430180 |
Protein GI | 156740051 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0569] K+ transport systems, NAD-binding component [COG4651] Kef-type K+ transport system, predicted NAD-binding component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.000486087 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGGGATAG CAGCAGACAT TGCCATTATT GTCGTTGCAG CGCTCATTGG CGGATTTGTC GCGCAGCGCT TTGGCCAACC GCTTCTTCTG GGATACATTC TGGCCGGCGT GGTCGTCGGT CCCCATACCG GTGGGATTAC CGTCAGCAAC ATTCATGACA TCGAACTGCT CGCCGAAATT GGGGTGGCGC TGCTCCTCTT TGCACTCGGG CTCGAATTCA ATCTTGGTCG TATGGGGAAG GTGCGCACTA TTGCGCTGGC AGGCACGACT ATTCAAATTC TGGTGACCAT GGCGTTCGGC TTTGGCATTG GTCGTATGCT TGGCTGGCCC GAGTACGAGT CGCTCTGGTT TGGCGCGATT GTGGCACTGT CGAGCACGAT GGTCATCCTC AAGACATTGC TCGAACAGGG GCGGCTCGGT TCACTGGCAG GGCGGATTAT GATGAGCATG CTGATCGTGC AAGACCTGGC GGTGGTGCCG ATGCTCATTA TCCTGCCAAC GTTGCAGGAC CCCGGCGCAG GATTGCTGAC GCTCGGATGG GCAATTCTCC ACGCTGCGCT GTTTCTTGCC CTGATGATCT ATGGCGGCAC GCGCCTGATG CCGGTCATTC TGCGGCAGAT TGCTGCCTGG AATTCACGCG AACTCTATCT GATTGCAATT GTTGCCATTG GGCTTGGCGT GGGGTATGCG ACCTATCTGG CGGGGCTGTC GTTTGCCTTC GGCGCATTCG TCGCCGGTAT GGTCTTGAGC GAGTCGGAGC ACAGCCATCA TGCGCTCAGC AGTATCGGTC CGCTTCGCGA TCTCTTTGGC CTGTTGTTCT TTGTATCGAT CGGCATGCTT ATCGACCCGG CGTTTCTGAT CGATCACCTC GGCATTGTGC TGCTTGTCGT GGCGCTCGTC GCCATCGGGA AGGCATTGAT CTTCGGCGCA ATCTCGCGCG CCTTCGGCTA TGCCGATGGC ATTCCTATCC TGGTTGGATT GGGCATGTTT CAGATCGGCG AGTTTGCCTT TGTGTTGGCT GAAGTCGGAC TGAATGCCAA TGCTATTCGC CAGGAAACCT TCACACTGGT GCTGGCAACG GCGGTGGTGA CAATGGTGTT GACCCCGTTT GCGGTGCGTG GCGCCGATCC GCTGGCGGCG CGGCTGCGGC GCACGCGAGA AGTGATCGAG GCTCATCTTG CTCCAGAACA AACGTTACGC AACCATATTA TCATTATCGG CTATGGGAGG GTTGGGCGTT ATATTGCCGG AGCGCTTCAG CATCTTCGTA TGCCTTGTGT GGTAATCGAC CAGGATTACA ATGCCGTCGA GCGGGCAAGG AAAGCTGGCT TGCCGGTGAT CTATGGCGAC GGCGCCAGCC CGGTGGTGCT GGAAGCGGCT GGATTGGCGC ACGCGCGCCT GGTGATGGTG GTCGTCGCCC GCGGAGTCGA TGTAGAGCAT GTGGTGCGTC AGGTGCGTCA GTTGAATGCA ACCGTGCCGC TGATCGCGCG CGCGGCGAAT GTGGCGCAGA TCGAGGAACT GCAACCGCTG GGTGTGGACG AAATCGTGCA GCCGGAGTTC GAGGCGGGGA TCGAGATGGT GCGCCAGGCG CTGCTACGTT GTGATGTGGC GCCGGAGGCG ATCGATGCGC TGAGCGATGT GGTGCGTCTG CACGGATATC AATCGCTGCG ACTGCCCGGG CAGGAGGAAT TGCTGCTCAA TGCGCTGCGC AAATCCGCTT CGGCGACCAG CCTTGCCTGG ATGACGGTCG AAGCCGGAGC GCCGCTCGAC GGCAAAACAA TCGGCGAAAA CCATATCCGC TGGCGTACCG GCGCCACGAT TGTTGCTATC GAGCGAGACG CGGCGATGAT TGCCAACCCT GGACCGGAGA CGTTGCTGCT GTCCGGCGAT CGACTCGCCG TTTGGGGAAC GCTCGCGCAG CGTCAGGCGG TGCATGCGCT CTGCGTACCG TTGGACGATG CGGCAACCGA AGCGCCGCAA CTGATGGATG GGCGCGCATC AGTGGAAGTC GATGCGTGCT GA
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Protein sequence | MGIAADIAII VVAALIGGFV AQRFGQPLLL GYILAGVVVG PHTGGITVSN IHDIELLAEI GVALLLFALG LEFNLGRMGK VRTIALAGTT IQILVTMAFG FGIGRMLGWP EYESLWFGAI VALSSTMVIL KTLLEQGRLG SLAGRIMMSM LIVQDLAVVP MLIILPTLQD PGAGLLTLGW AILHAALFLA LMIYGGTRLM PVILRQIAAW NSRELYLIAI VAIGLGVGYA TYLAGLSFAF GAFVAGMVLS ESEHSHHALS SIGPLRDLFG LLFFVSIGML IDPAFLIDHL GIVLLVVALV AIGKALIFGA ISRAFGYADG IPILVGLGMF QIGEFAFVLA EVGLNANAIR QETFTLVLAT AVVTMVLTPF AVRGADPLAA RLRRTREVIE AHLAPEQTLR NHIIIIGYGR VGRYIAGALQ HLRMPCVVID QDYNAVERAR KAGLPVIYGD GASPVVLEAA GLAHARLVMV VVARGVDVEH VVRQVRQLNA TVPLIARAAN VAQIEELQPL GVDEIVQPEF EAGIEMVRQA LLRCDVAPEA IDALSDVVRL HGYQSLRLPG QEELLLNALR KSASATSLAW MTVEAGAPLD GKTIGENHIR WRTGATIVAI ERDAAMIANP GPETLLLSGD RLAVWGTLAQ RQAVHALCVP LDDAATEAPQ LMDGRASVEV DAC
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