| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0009 |
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| Symbol | lysS |
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| ID | 5537466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 7529 |
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| End bp | 8998 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640892174 |
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| Product | lysyl-tRNA synthetase |
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| Protein accession | YP_001430166 |
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| Protein GI | 156740037 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
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| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00617172 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000378083 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAACTCA ACGAACTACA GCAACAGCGC CTTGCGAAAC TCGAACGGCT GCGCGCCGCG
GGCATTGATC CGTATCCGCC ACGCGCGCAA CGCACCCATA CGATTGGGGA GGTCCTTGCC
GGCTTCGATC AATTGATGGA TCGCGGTGAA CAGGTGACTG TCGCCGGTCG GATTGTCGGT
GCGCGCCGGG TGCTAGGCAA ACTGGCGTTT GCCCATATCG AAGACGAGTC GGGGCGAATC
CAACTCTGGC TCAGTCGCGG CGACCTTGGC GACGAGTGGT TCGACCGGTT TCGCGACGAT
CTCGATACGT TCGACATTGT CGAAGCCAGC GGAACCCTGC GCCGCACGCA ACGCGGCGAA
CCTTCGGTGT TCGTCACGCG CATGGGAGTG CTGGCAAAGT CGCTCAACCC GCCACCCGAA
AAGTGGCACG GGCTTTCCGA TATCGAGGAG CGCCATCGCC AGCGATACCT CGACCTGATC
GTCAATCCCG AGGTGCGCGA CGTGTTTCGC ACCCGCGCGA CGATCGTCCG CACGATGCGC
CGGTTTCTCG ATGAACGTGG TTTTCTCGAG GTGGAAACGC CAACCCTGCA ACCGATCTAC
GGCGGCGCGT CTGCCCGCCC GTTCATCACC CATCACAACC AACTGAAGCA AGATCTCTAT
CTACGCATCG CCGTCGAACT CTACCTGAAG CGCCTGATCG TTGGCGGTTT CGAGCGTGTC
TACGAGATCA GCAAGGTCTT CCGCAACGAA GGGGTCGATC GCACGCATAA CCCTGAATTT
ACAATGATGG AGTGCTACCA GGCGTATGCC GATTACCACG ATATGATGCG TCTGGTGGAG
GATCTGTATC GCGCGTTGGC GCTGGAAGTC ACCGGAAGCA CAACCATTGT GTTTCAGGGA
CAGACGATCG ATTTTGGTCC TGCATGGCGG CGCGTCTCGA TTCCCGCAGC GATTGCCGAA
CGTACCGGCA TCGATATTCT CGAATTGACC GAACTCGAAC CGCTTCAGGA GGCAATTCGC
GCCGCCGGGC TGAAGGTCGA TCTCAAGCCG GGTTGGGGGC GACAGGTCGA TGAACTGTTC
AGCGTCTATG TGCAACCGGC GTTGATCCAA CCGACCTTCG TGCTCGATCA TCCGGTGGCG
CTGTCGCCGC TGGCCAAACG ACGCCCCGAT CAACCTTTGC TGGTCGAACG TTTCGAGCCG
GTCGTGGCAG GAATGGAGAT CGGCAATGCT TTTACTGAGT TGAACGATCC GCTCGACCAG
GAACAACGCT TTCTCGAACA GGGGCGCGCC TATGATGCTG GCGACGATGA AGCGCAACAG
ATGGATGTCG ATTTTCTCAA TGCGCTGATG TACGGCATGC CGCCAACCGG CGGTTTGGGG
ATCGGCATCG ACCGGACGGT CATGCTATTC ACCGATCAGC CGAGCATTCG CGAGGTGATC
CTCTTCCCGC ATCTGCGACC GCGGGAGTGA
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| Protein sequence | MELNELQQQR LAKLERLRAA GIDPYPPRAQ RTHTIGEVLA GFDQLMDRGE QVTVAGRIVG
ARRVLGKLAF AHIEDESGRI QLWLSRGDLG DEWFDRFRDD LDTFDIVEAS GTLRRTQRGE
PSVFVTRMGV LAKSLNPPPE KWHGLSDIEE RHRQRYLDLI VNPEVRDVFR TRATIVRTMR
RFLDERGFLE VETPTLQPIY GGASARPFIT HHNQLKQDLY LRIAVELYLK RLIVGGFERV
YEISKVFRNE GVDRTHNPEF TMMECYQAYA DYHDMMRLVE DLYRALALEV TGSTTIVFQG
QTIDFGPAWR RVSIPAAIAE RTGIDILELT ELEPLQEAIR AAGLKVDLKP GWGRQVDELF
SVYVQPALIQ PTFVLDHPVA LSPLAKRRPD QPLLVERFEP VVAGMEIGNA FTELNDPLDQ
EQRFLEQGRA YDAGDDEAQQ MDVDFLNALM YGMPPTGGLG IGIDRTVMLF TDQPSIREVI
LFPHLRPRE
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