Gene Rcas_0003 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0003 
Symbol 
ID5537460 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3125 
End bp3502 
Gene Length378 bp 
Protein Length125 aa 
Translation table11 
GC content56% 
IMG OID640892168 
Productthioesterase superfamily protein 
Protein accessionYP_001430160 
Protein GI156740031 
COG category[R] General function prediction only 
COG ID[COG0824] Predicted thioesterase 
TIGRFAM ID[TIGR00051] acyl-CoA thioester hydrolase, YbgC/YbaW family
[TIGR02799] tol-pal system-associated acyl-CoA thioesterase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00198303 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000000031845 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
GTGGAGCATC GTCTGACCTG TAAGGTCTAC TACGAAGACA CCGACGCCCT CGGCGTCGTG 
TATCACGCCA ATTACCTCAA ATACCTCGAG CGTGGGCGCA GCGAGTACGT GGAGCGGTTT
GGCAAGTCGA TCTGGGAGTG GAATCAATCC GGTTACTACA TCGTCGTCTA TGCGATGAAC
ATTCGCTTCA AGCGCGCTGC ACAACTCGGC GACATCCTCG ACGTTGTTTC CACCTTCACC
CTGCAATCGC CATACCGGGG GTTGTTCAAG CAGCGCATCG AACGCGACGG ACAAACCTAT
GTCGAAGCCG ATGTGGAACT TGCGTGCCTC GACCCGCAGT TCAACCTGCG CGAGTTTCCG
CCAGAGTTTC GTTCCTGA
 
Protein sequence
MEHRLTCKVY YEDTDALGVV YHANYLKYLE RGRSEYVERF GKSIWEWNQS GYYIVVYAMN 
IRFKRAAQLG DILDVVSTFT LQSPYRGLFK QRIERDGQTY VEADVELACL DPQFNLREFP
PEFRS