| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_2871 |
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| Symbol | |
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| ID | 5421720 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthobacter autotrophicus Py2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009720 |
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| Strand | + |
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| Start bp | 3196001 |
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| End bp | 3196546 |
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| Gene Length | 546 bp |
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| Protein Length | 181 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640882125 |
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| Product | putative conjugal transfer protein precursor |
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| Protein accession | YP_001417767 |
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| Protein GI | 154246809 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0218812 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCCGCT TCGGCTACGT CATGACGACG TACTTCACCG TGATCTTGAT CGGTGGCCTG
TCCTTCATCC ACATCACGCC CAGGCTGATC TGGAACGCGT CCGCCAGCAC GCCGGTCGGC
CTCTATTCAA TCGATCGGTC GCCGCAGCTC GAAGTGACCG ACCTGGTCGC CGTAAACGCA
CCCGAGCCGC TCGCATCGTT CCTCGCTGAG CGCGGCTATC TGCCTCGCGG CGTCCCGCTC
CTGAAACGCG TTGCGGGTCT ATCGGGGCAA CAAGTCTGCC GCACCGGCGC ACACGTCACC
GTAGACGGCA TCCCGGTCGG CGACGCGCTG CCGCGCGACC GTCTCGGCCG CCATCTCCCC
GTTTGGCAGG GCTGCCGCCG CATCGCCGCC GACGAGATCT TCCTCATGAA CTGGTCCGTG
GAGGACAGCC TGGACGGTCG CTACTTCGGT CCAGTTTCCC GCGGCTCGGT CATCGGACGA
GCAACCCCTC TCTACACCGA CGAAGACGGC AACGGCCGCT TCGAATGGCG CGCCGCGACG
CGGTGA
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| Protein sequence | MTRFGYVMTT YFTVILIGGL SFIHITPRLI WNASASTPVG LYSIDRSPQL EVTDLVAVNA
PEPLASFLAE RGYLPRGVPL LKRVAGLSGQ QVCRTGAHVT VDGIPVGDAL PRDRLGRHLP
VWQGCRRIAA DEIFLMNWSV EDSLDGRYFG PVSRGSVIGR ATPLYTDEDG NGRFEWRAAT
R
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