| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_2703 |
|---|
| Symbol | |
|---|
| ID | 5423679 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | - |
|---|
| Start bp | 2993005 |
|---|
| End bp | 2993811 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640881957 |
|---|
| Product | shikimate dehydrogenase substrate binding subunit |
|---|
| Protein accession | YP_001417601 |
|---|
| Protein GI | 154246643 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0813959 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.368485 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCG ACCTGTCCGG CGCCACCCGC CTCTACATCA TCGTCGGCGA TCCGATCGCC
CAGGTGAAAT CCCCCGCCGG CATGACGGCA GCTTTTCTCT CCCGCAATCA TGACGGCATC
CTTGTGCCGG TGCAGGTGGG AACCGGGGAT CTCGGCGACC TGCTTGCCGT CTCGGGCAAG
CTGAAAAATC TCGGCGGCGT CGTCGTCACC GTGCCCCACA AGTTCGGCTG CTTCTCCCAC
TGCGCCGAAG CCTCCGACCG CGCCGCCTTC ATCGGCTCGG TGAACATCAT GCGCCAGCGA
CCCGAAGGCG GTTGGTATGG CGACATCGTG GACGGCCTCG GCTTCGTCAG CGCCGCGGTC
AATGCGGGCT TCGATCCTGA CGGCAAGCGG GCGCTGCTGG TTGGGGCGGG CGGCGCGGGT
TCCGCCATCG CTCTCGCCCT GATCGATGCG GGCGTTGCCG AGCTCGCCAT CCATGACGCC
GATGTGGCGC GGCGCGATGC CCTCGTCGCC CGCCTCAACA CCCTCGGCAA GGGCCGGGCG
GTGGCGGGTT CCACCGATCC CGCTGGCTTC GACCTCGTCG CCAACGCCAC GCCCATGGGC
ATGAAGGAGG GCGATCCGCT GCCCGTGGAT GTGACGAGGC TCGTGCCCGC GACCCATGTG
GGCTGCGTCA TCACCCAGCC GGCGGTGTCG CCGCTGATCG CCGCCGCCCG CGCCGCCGGC
TGCCCCACCT CCACCGGCAC CGAGATGTAC TTCGCCCTGC AGGAGAAGAT GGTGGACTTC
CTGCTGCACA CCGACTCCAA CGCTTGA
|
|---|
| Protein sequence | MNIDLSGATR LYIIVGDPIA QVKSPAGMTA AFLSRNHDGI LVPVQVGTGD LGDLLAVSGK
LKNLGGVVVT VPHKFGCFSH CAEASDRAAF IGSVNIMRQR PEGGWYGDIV DGLGFVSAAV
NAGFDPDGKR ALLVGAGGAG SAIALALIDA GVAELAIHDA DVARRDALVA RLNTLGKGRA
VAGSTDPAGF DLVANATPMG MKEGDPLPVD VTRLVPATHV GCVITQPAVS PLIAAARAAG
CPTSTGTEMY FALQEKMVDF LLHTDSNA
|
|---|
| |