| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3406 |
|---|
| Symbol | |
|---|
| ID | 5454684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3644251 |
|---|
| End bp | 3645030 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640878995 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001414666 |
|---|
| Protein GI | 154253842 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4469] Competence protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.101683 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 0.312255 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATGG TGATCGAAGC CGCATATGCA GACGGCACTG GTGTAGCCAA TGCACTGCGT
ATGTCTCAGG TGCAGTGGCA CGAGTTGCAA CGGAATTACC GCGTTGGTGA TCTGCAGATG
CCTTGCTGCA GCGCTCCAGC GGTCCCCAAG GTCAGTGCTA ATGGCTACCC ATTCTTCGCA
CATCTAGGAG GTGCGTGCAC TACTTCCGAA GAAAGCCAAT GGCATCTGGC GGCCAAGATA
CTTGTGCGCA GCGTGCTCGA AGACTTGGGT TGCCGCGCTT CGGTTGAAAT GCCGGGTTCG
GGTGACGCAG GCCGCTGGCA GGCTGACGTT TGGGGTGAGC GCAATGGTGT TAGGTTGGCC
GTCGAGATCC AAAGGTCGTA TCAGTCGCTC CGCGACTACC GTAAACGCCA AGGGCGGTAC
AGCGACGAGG GCGTCAAGTC GCTTTGGTTG TTGGGGCAGG AGCGATACAG CACTCTCGCA
AAGAGCATGG GCAAGGAGCG CTTGCGCACC GAATTTGGGG GTAAGTTCCC GCCAGGCGGA
CACTTCGGCC CGTGCCTTCC TGATCTACCC GTCGCGATGC TTGAGCTAGA GCCAGTGCCC
ACGATCAAAG GTGCCGGATT CTTTACTGCG ACCCTTCCAG ACCTGCTTGA GGCAGTGCTA
AGCAATCGCT TTCTCTGCAT TGACGGTCTT TGGTGTATTA ATAACCTGGA CTCGATGAGT
AGCGCCGCCA AACGCTCACA CGAGCTCGCC GCAGCCAAGC GCGTGGCGGC AAACACGTAG
|
|---|
| Protein sequence | MAMVIEAAYA DGTGVANALR MSQVQWHELQ RNYRVGDLQM PCCSAPAVPK VSANGYPFFA
HLGGACTTSE ESQWHLAAKI LVRSVLEDLG CRASVEMPGS GDAGRWQADV WGERNGVRLA
VEIQRSYQSL RDYRKRQGRY SDEGVKSLWL LGQERYSTLA KSMGKERLRT EFGGKFPPGG
HFGPCLPDLP VAMLELEPVP TIKGAGFFTA TLPDLLEAVL SNRFLCIDGL WCINNLDSMS
SAAKRSHELA AAKRVAANT
|
|---|
| |