| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3346 |
|---|
| Symbol | |
|---|
| ID | 5456191 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 3585324 |
|---|
| End bp | 3586088 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640878936 |
|---|
| Product | cephalosporin hydroxylase |
|---|
| Protein accession | YP_001414607 |
|---|
| Protein GI | 154253783 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG3510] Cephalosporin hydroxylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.190282 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 0.507049 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATAA GTATCGATAC GGAATCCCGC ACCATCGAAG TGGGAGACAA CGAAAAACTC
GATCTGTACA GCGACGCCGC TTTTCGTGTT CTGTCGGATC TCTGGGTCAA GGTCGGGTGG
AATCAAAAAT ATTCCTACAG CTTTTCATGG CTCGGCGTTC CGATTATTCA GTTGCCGGAA
GATATGATCC GCTTCCAGGA AGCGATCTTC GAGCTCAAAC CCGACGTGAT TATCGAGACG
GGCGTCGCGC ATGGCGGTTC GGCTATTTTC TCCGCCAGCC TGTGTCACCT GCTCGGTCAT
GGCCGCGTCG TTGCGGTGGA TATTGAAATC CGGCCGAAAA ACCGGCAGCG GATAGAAGCG
CATCCCTTCG CGCATCTCAT CACGCTCATC GAAGGCTCCT CCACTGCGCC GGAAATCGTT
GAGCAAGTTC GCAGCCATAT CAAACCCGGC GACAAGGTCG TGGTCGTCCT CGATTCCGAT
CATAGCTACA AGCATGTGAC GGACGAACTG GCCGCCTATG CGCCCATGGT TTCGGAAGGC
TCGTGGATTA TCGCGACCGA CGGCGTGATG CAGGACCTGC CGGATGTTCC GCGTGGCCAG
CCGGGCTGGG ACAAGGATAA TCCGGCCGCT GCCGCGCGCG ATTTCGTGGC CGCAAATCCG
GGCTTTGTGC TGGAGACGCC GGCATGGCCG TTCAATGAAT CCACACTCTC GGACAACATC
ACGCATTGGC CGGATGCCTG GGTCCGGCGC GCGGGAAAAG CGTGA
|
|---|
| Protein sequence | MKISIDTESR TIEVGDNEKL DLYSDAAFRV LSDLWVKVGW NQKYSYSFSW LGVPIIQLPE
DMIRFQEAIF ELKPDVIIET GVAHGGSAIF SASLCHLLGH GRVVAVDIEI RPKNRQRIEA
HPFAHLITLI EGSSTAPEIV EQVRSHIKPG DKVVVVLDSD HSYKHVTDEL AAYAPMVSEG
SWIIATDGVM QDLPDVPRGQ PGWDKDNPAA AARDFVAANP GFVLETPAWP FNESTLSDNI
THWPDAWVRR AGKA
|
|---|
| |