| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3188 |
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| Symbol | |
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| ID | 5453573 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 3401677 |
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| End bp | 3404061 |
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| Gene Length | 2385 bp |
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| Protein Length | 794 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640878777 |
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| Product | surface antigen (D15) |
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| Protein accession | YP_001414451 |
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| Protein GI | 154253627 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
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| TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 70 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGCGAC TGGCCGATAA CAAGACCATG ACTGCGCGTG CGGTACGGAT TTCCGTGGCG
TTTGTTCTTG CGTGGCTCAT TGCTGGCTGG GGTGCCGGCG AAGGCAAATT CGGTGTCTCT
GCTGCATACG CCGCAGAACA GCCTGTCATC AGTGAAATCG TCGTTCAGGG AAATCAGCGC
ATCGAAGCGG AAACTGTCCG CTCTTACATG CTGATTACGC CGGGAACAGA GTACGACCCT
CAGGTCGCCG ACCAGTCGCT CAAGCAGCTT TTTGGTACAG GCCTTTTTGC AGACATAACG
ATGCATCTCG ACGGTTCGCG TCTCGTTGTG TCCGTGGTCG AGAACCCGAT CGTCAATCGC
GTCGCCTTCG AAGGAAACAG TGCGCTCAAG GAAGAAGATC TGAAAAAGGA AGTGCAGCTT
CAGCCGCGCG TGGTCTACAC GCGCGCGAAG GTGCAGGGCG ACGTAACGCG GATGATCGAG
CTGTACCGTC GCAGCGGACG TTTCTCGGCT ACCGTCGAAC CCAAGGTTAT TCAGCTTCCG
CAGAACCGCG TCGATCTCGT CTTTGAAATC ACCGAAGGTC CGAAGACCAA AATCGCCTCG
ATCAACTTTA TCGGCAACGA CGAGTTCAGT GACGGAACAT TGAGAGAAGT GATTTCGACG
GGCGAGTCTG CCTGGTGGAA GTTTCTGTCA TCATCCGACA GTTATGATCC TGATCGTCTG
ACCTATGACC GCGAACTTCT GCGCCGCTAT TATCTTCAGC GCGGCTACGC CGACTTCCGA
GTTGTTTCCG CTGTGGCAGA CTTGAGCCGC GGCGATGCCG CCTTCCACAT CACATTCACT
GTGGAAGAGG GAGAAATCTA CGAGTTTGGC GAGGTCGAGG TTACGACCGA GTTGGACAAG
CTGAACAAGG AAGAGCTTGA AGCGCTTCTG TTGCCGAAGT CGGGCGACGT CTACAACGCC
GGGCTTATCG ATGAGACAAT CGATGCGCTG ACCTTTGCCG CCGGCACCAG CGGCTATGCC
TTCGCGGAGG TCCGCCCGCG TATCAAACGG CGTCGCGACG AACGCGTGAT CGATCTGACA
TTCCAGATCA CCGAAGGTCC GCGCGTTTAT GTCGAACGGA TTAATATCAC CGGTAACTCG
CGTACTCTCG ACAGGGTGGT GCGCCGTCAA ATGCGAATGG CTGAAGGCGA CGCCTTCAAC
AAGGTTCTGC TCGACAGATC CGAGAAGAAT ATTCGCGCGC TGCAATTCTT CAGCAAAGTC
GAAGTGACGC AAAGCCCGGG CTCTGCGCCC GACAAGACGA TCGTCAATGT CGACGTCCAG
GAGCAGTCGA CGGGCTCACT CTCGCTCAGT GCGGGTTTTT CGACGCTTGA TAATGCTGTG
GCCGGCATCC AGCTATCGGA ACGGAATTTC CTCGGTCGAG GCCTTCAGTT GAGCACTGCG
CTTTCGATCT CCAAGCGCCG CCAGCTGATC GAATTCCACT ATACGGACCC CTATTTCCTG
GACCGCAACC TTCTCGGCGG CATAGATCTT TTCGGAAGTG AGACCAACTT TCAGAACGAA
TCCTCATTCG ACTCTCGTTC GCAGGGCTTC GGGCTCCGGT TCGGTTTCCC TCTCTCGGAA
AAGAGCCGTT TCCTGTTGCG GTATCAGTTC CGCTTCGACG AGATTTTCAA CGTCCGTTAC
CTTTCCTGTA CTGATCCGGC TTATGTGCCC GGAACCTATT GCGTGTCTCC GATCGTAAAG
GACGCCGAAG GTACGGAGTT CCGGTCCATC GTTGGCTACG ACTACTACTA CGATAACCGC
AATGATCCTG TGGAGCCGAC GGGCGGTTGG GACTTCCTGT TCACCCAGAA CTTCGCCGGT
CTCGGCGGCA CCGTCCGCTA TGTATCGACC GAAATTCTCA CTCGTTACTA TTACGAATTG
TCCAAGGAAT TCCTGACGAG CTGGCGTCTC GATGGCGGTT ATATCTACGG TCTCGGTGAC
GATGTGCCCT TGAACGATCA TTTCTTCAAA GGCGGAAACA ATATCCGTGG CTTTGCCCGC
GGAGGCATCG GTCCTCGAGA CGTAGTTTCG ACAAACCAGG ACGCGGTTGG TGCGACCGCT
TATATCTTCG GCACCGCTGA AATTACCTTC CCGAACGGAC TGCCAGAAGC ATTGGGGATC
AAGACTTCCC TATTCACCGA CGGTGGGTTT ATTGGTTTGT CTGACTATGA CCAGGCGCTC
TATCCGGGCA TTGTCGATGA TTTCGCTCCG CGCGCGTCGG TGGGTGTCAG CCTCTATTGG
CAGTCGCCAT TCGGACCCAT CCGGCTTGAT CTCGCGCAAG TGCTGCTGGA TGAGCCCTAT
GACGAGAGGG AAGCTTTCCG CTTCAGCGCT GGTACATCGT TCTAA
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| Protein sequence | MGRLADNKTM TARAVRISVA FVLAWLIAGW GAGEGKFGVS AAYAAEQPVI SEIVVQGNQR
IEAETVRSYM LITPGTEYDP QVADQSLKQL FGTGLFADIT MHLDGSRLVV SVVENPIVNR
VAFEGNSALK EEDLKKEVQL QPRVVYTRAK VQGDVTRMIE LYRRSGRFSA TVEPKVIQLP
QNRVDLVFEI TEGPKTKIAS INFIGNDEFS DGTLREVIST GESAWWKFLS SSDSYDPDRL
TYDRELLRRY YLQRGYADFR VVSAVADLSR GDAAFHITFT VEEGEIYEFG EVEVTTELDK
LNKEELEALL LPKSGDVYNA GLIDETIDAL TFAAGTSGYA FAEVRPRIKR RRDERVIDLT
FQITEGPRVY VERINITGNS RTLDRVVRRQ MRMAEGDAFN KVLLDRSEKN IRALQFFSKV
EVTQSPGSAP DKTIVNVDVQ EQSTGSLSLS AGFSTLDNAV AGIQLSERNF LGRGLQLSTA
LSISKRRQLI EFHYTDPYFL DRNLLGGIDL FGSETNFQNE SSFDSRSQGF GLRFGFPLSE
KSRFLLRYQF RFDEIFNVRY LSCTDPAYVP GTYCVSPIVK DAEGTEFRSI VGYDYYYDNR
NDPVEPTGGW DFLFTQNFAG LGGTVRYVST EILTRYYYEL SKEFLTSWRL DGGYIYGLGD
DVPLNDHFFK GGNNIRGFAR GGIGPRDVVS TNQDAVGATA YIFGTAEITF PNGLPEALGI
KTSLFTDGGF IGLSDYDQAL YPGIVDDFAP RASVGVSLYW QSPFGPIRLD LAQVLLDEPY
DEREAFRFSA GTSF
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