| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3090 |
|---|
| Symbol | |
|---|
| ID | 5455545 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 3300326 |
|---|
| End bp | 3301987 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 553 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640878679 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001414354 |
|---|
| Protein GI | 154253530 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 0.0770134 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCTGG CATCGAAGAG CGATATCGAA GCGCATACGA AGGCCGGCTG GTGGGGCACG
GAAACCATCG ACGCGCGTTT TCGCGCGAAC GCTGCGGCGA ATCCCGGCCG CACCGCCGTC
GCCGATCCGC CGAACCGCGT GGACATTGAC GGGCGCGAAC CGCGCCGTCT CACCTATCGC
GAACTCGGCG CGGAAGCGGA CCGGATCGCG ACGGCGTTTC TCGATGCCGG GCTGAAAAAG
GACGATGTCG TCGCGGTGCA GCTCCCGAAT GTGGTGGAGC TCGTCGCGGT CTATCTCGGC
GCCTGGCGCG CGGGGTTGAT CGTGACGCCG GCGCCCGTGC AATGGCGCGC GCATGAACTG
GGCGACGTGC TCGCCTTTGT CGGCGCCAAG GCTGTGGTGA CGGCACGCAA CATTCGCGGC
CACGACCATG CCGCGATGTT CGAGAGCCTG AAGCCCAAAC TGCCGGGGCT GAGCAAGCTG
TTCGTGATCG GAGAGACTGC GTGGCCCGAA GCCGACAGCG CGCGCCTCGA TGCCCTCCCG
GCGGCGGATG CGAACGATGC GGCGACGATC TGCTGGACAT CGGGCACCGA AGCGCGGCCG
AAGGGCGTGC CGCGCAGTCA CAATCACTGG ATGATCGCCG GGCTCGCCTG CGCGGATGCG
GCACAATTGC AGCCGGGCGA CACGGTGCTC AACCCCTTCC CGCTCGTGAA CATGGCTGCG
ATCGGCGGGT GCTTCATGCC CTGGCTGCTG ACGGGAGGCA CGCTCGTGCA GCACCATCCG
TTCGATTTGC CGGTCTTTCT GAAACAGCTT GTCGGCGAAA AGATCACCTA TACCGTCGCA
CCGCCCGCCG TTCTCTCGCT GCTGCTGAAG GAAGAGAAGC TCATGGCGAG CCTCGACCTT
TCCGCCGTGC GCAGCATCGG TTCGGGCTCC GCGCCGCTCT CGCCCTGGAT GGTGAAGACG
TGGCAGGAGC AATACGGGCT CCCCATCGTC AATATCTTCG GCTCGAACGA GGGCACTTGC
CTTATTTCCG GCGCAGGCGA TGTGCCGGAC CCCGAAGAGC GCGCCCAGTT TTTCCCGCGT
TTCGGCGTGA AGGGCTTCGA CTGGCCGGCG AAGATCGCGG GCAGTATCGA GACGAAATTG
ATCGACCTGC AGTCGGGCGA GGAAATCACC GAGCCGGGCA AGCCCGGCGA ATTGCTCATC
AAGGGCGCGA CCGTCTTTGC GGGTTATTAC CGCGCGGGCG ATGGCGGCGG CCCGGCGGAG
GCTATCGACA AGGACGGCTT CTTTCATACG GGCGACGTTT TTGAAATCGC GGGCGACGGT
AACCGCTACT ACCGCTTCGT GGAGCGGGCG AAGGACATCA TCATTCGCGG CGGCATGAAC
ATCTCGCCCG GCGAGATCGA TGGATTGCTG GCGGGAATGC CGAAGCTCCG TGAGGCGGCC
GTTGTCGGCT ATGCGGACGG CGTGATGGGC GAACGCATCT GTGCCGTAGC CGTCCCTGCC
GAAGGAGAGA GCGTGACGCT GGAAGATGTC CGCGCCCACC TGATGAAGAG CGACATTGCC
GCCTACAAGC TCCCCGAACG GCTGGAACTC GCTGAAGCCC TGCCGCGCAA CCCGCTGGGC
AAGGTGCTGC GCCGGCAGCT CAGGGAGATG ATCGGGGGCT AG
|
|---|
| Protein sequence | MILASKSDIE AHTKAGWWGT ETIDARFRAN AAANPGRTAV ADPPNRVDID GREPRRLTYR
ELGAEADRIA TAFLDAGLKK DDVVAVQLPN VVELVAVYLG AWRAGLIVTP APVQWRAHEL
GDVLAFVGAK AVVTARNIRG HDHAAMFESL KPKLPGLSKL FVIGETAWPE ADSARLDALP
AADANDAATI CWTSGTEARP KGVPRSHNHW MIAGLACADA AQLQPGDTVL NPFPLVNMAA
IGGCFMPWLL TGGTLVQHHP FDLPVFLKQL VGEKITYTVA PPAVLSLLLK EEKLMASLDL
SAVRSIGSGS APLSPWMVKT WQEQYGLPIV NIFGSNEGTC LISGAGDVPD PEERAQFFPR
FGVKGFDWPA KIAGSIETKL IDLQSGEEIT EPGKPGELLI KGATVFAGYY RAGDGGGPAE
AIDKDGFFHT GDVFEIAGDG NRYYRFVERA KDIIIRGGMN ISPGEIDGLL AGMPKLREAA
VVGYADGVMG ERICAVAVPA EGESVTLEDV RAHLMKSDIA AYKLPERLEL AEALPRNPLG
KVLRRQLREM IGG
|
|---|
| |