| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3083 |
|---|
| Symbol | |
|---|
| ID | 5454482 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3293702 |
|---|
| End bp | 3294481 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640878672 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001414347 |
|---|
| Protein GI | 154253523 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.192229 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 0.191447 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGACG CTACGGAAAT CAACCTCCCG GATTACAATC TGACGGGTAA AGTGGCGCTG
GTGACGGGCG CGACAAGTGG CCTCGGGCGC CGTTTCTCGC TGGTTCTGGC GAAGGCCGGC
GCGAAGGTTG CGATTACCGG CCGCCGTCTG GAGCGTCTCG ATGAACTCAA GCGCGAAATC
GAAAGTCTCG GCGGTACGGC GGCGGCCATT GCGCTGGACG TCACGGATAC GGGAAGCATC
GCCGCCTGCA TGAGCGAGAC GGAGAAATCT CTCGGGCCCC TCGACATTCT CGTCAACAAT
GCCGGTATGA ATGTGCAGGC GCTGCCCGCC GAAGTGACGC CGGAAGGCTT CGACACCATG
TTCGATACCA ATGTACGCGG TGCCTTCTTC ATGGCGCAGG CGGCTGGCCG TTCGATGATG
GCCCGGGGTG CCGGGGGACG CATCATCAAC ATTGCCTCGA TTGGCGCCCA TACGGTGCTT
CCGGGTCTCA CCATCTATTG CATGACCAAG GCGGCCATCG CGATGATGAC GAAGTCGCTC
GGCAAGGAAT GGGCGCGCAA GGGCATCAAT GTGAACGCCA TGTGCCCCGG CTTCATCGAG
ACGGAGCTCA ATTCCGATTG GTTTCAGTCC GAGGGCGGAC AAAAGCAGAT CAAGACATGG
CCGCGCCGCA GGCTTGGCCT TGAAGAAGAC CTGGACGGCA CCTTGCTTCT GCTTGCGTCC
GACCACGGAC GGTTCATCAC CGGTTCGCTG TTCACGATAG ATGACGGTCA GTCGCTCTGA
|
|---|
| Protein sequence | MGDATEINLP DYNLTGKVAL VTGATSGLGR RFSLVLAKAG AKVAITGRRL ERLDELKREI
ESLGGTAAAI ALDVTDTGSI AACMSETEKS LGPLDILVNN AGMNVQALPA EVTPEGFDTM
FDTNVRGAFF MAQAAGRSMM ARGAGGRIIN IASIGAHTVL PGLTIYCMTK AAIAMMTKSL
GKEWARKGIN VNAMCPGFIE TELNSDWFQS EGGQKQIKTW PRRRLGLEED LDGTLLLLAS
DHGRFITGSL FTIDDGQSL
|
|---|
| |