| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3069 |
|---|
| Symbol | |
|---|
| ID | 5455716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3276387 |
|---|
| End bp | 3277895 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640878658 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001414333 |
|---|
| Protein GI | 154253509 |
|---|
| COG category | [I] Lipid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1545] Predicted nucleic-acid-binding protein containing a Zn-ribbon
[COG3425] 3-hydroxy-3-methylglutaryl CoA synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCAGC AGACGGTGGG ACTTACAGCA TTTGGCGGAT ATATCCCGCG CCTTCGCCTG
CAGCGAAAAG CGGTAGCACA GGCGAACGCA TGGGTCGCCC CGAACTTCCT CGGCAAGGGG
AAGGGCGAGC GCTCCATGGC CAATTGGGAC GAAGATGCAC TGACCATGGC GGTAGAGGCG
GCGCGGGACC TGCTGGGGCC CGACGACGAC CGGAGCCATG TGGATGCGCT CTATCTCGGG
TCGACGACCT TGCCCTTCAA AGACCGGCTG AACAGCGGCA TCGTTGCGGC CGCCCTGACG
CTTGATGAGC GGGTTCGCGC CGTCGATGTG GCGTCCACTC AGCGAGCGGG CACCTCGGCC
CTCATGCAGG CGCTGTCCGC AGTCAAGGCG GGCGAGGCGA AGCACGCGCT GGTCCTCGCG
TCCGATCACC GCAAGACCAA AGCAGTCACC GCGCAGGAAC TGGATTTTGG CGACGGTGCA
GCGGCCGTCT CCGTCGGCAC TGAAAATGTG ATTGCTGCAT ATCTCGGCGG CGCAAGCCTG
ACCGTGGATT TCGTCGATCA CTTCCGGGGC GACAGCGAAG AGTTCGACTA TAATTGGGAA
GAACGCTGGA TCCGCGACGA AGGCTTCGCA AAGATCGTTC CGCGCGCGGT GAAGGCAGCA
CTTGAGAACT CCGGCGTAAG TGCTGGAGAG ATCAAGCACT TTGTTCTCCC GTGTAGTTTC
GGCGACAAGT TTGTCCAACA GCTTGCGAAA CGTTCAGGCA TCGCGCCCGA AGCGGCGCGG
GATACGCTCG CGGCGAATTG CGGCGAGACC GGCGCGGCCC ATTCGCTCGT CATGCTCGTT
CACACATTGC AGAAGGAAGC AAAGCCTGGC GACAAGGTGA TGGTTCTCCA TTTCGGCGGC
GGTTGCGACG CTCTCGTCTT CGAAGTGACC GACAAGCTTT CGAGCCAGGC CGGGAAACGC
GGCATCGTCG GTTCGCTCGC CAATCGCACA GAGGAAACCA ACTACCTCAA ATTCCTGACC
TTCAATGGCC TCATTGAATG GGAAAAGGGA ATGCGCGCCG AGCAGGACAA GAAGACCGCT
CTCACCACGC TCTACCGCAA CGAGGACATG CTGATGGGTC TCGTGGGCGG CCGGTGCACG
GAAACGGGTG TCATCCAGTT CCCCAGGTCC CGCATATCGG TCAATCCGAA CAACCACACG
GTCGACACGC AGGAGCCTTA CAAATTCGCC GAGAAGAAGG CGAAAATCCT ATCCTGGTCG
GCGGACTTCC TCTCCTTCAG CATGAACCCG CCGAACCATT ACGGCATGGT CGTGTTCGAC
GAAGGCGGCC GGATCATGAT GGATTTCACG GATGTCGAAG CCGGCACTGT CGATTCCGGC
ATGGAAGTGA AGCTCGTCTT CCGGATCAAG GAATTCGACG ACAAGCGCGG TTTCCGCCGA
TATTTCTGGA AGGCAGTTCC TGTCGCGGCG AGCACAGCAA AATCACAAAC GGGCCAGGCG
GCCGAATAG
|
|---|
| Protein sequence | MAQQTVGLTA FGGYIPRLRL QRKAVAQANA WVAPNFLGKG KGERSMANWD EDALTMAVEA
ARDLLGPDDD RSHVDALYLG STTLPFKDRL NSGIVAAALT LDERVRAVDV ASTQRAGTSA
LMQALSAVKA GEAKHALVLA SDHRKTKAVT AQELDFGDGA AAVSVGTENV IAAYLGGASL
TVDFVDHFRG DSEEFDYNWE ERWIRDEGFA KIVPRAVKAA LENSGVSAGE IKHFVLPCSF
GDKFVQQLAK RSGIAPEAAR DTLAANCGET GAAHSLVMLV HTLQKEAKPG DKVMVLHFGG
GCDALVFEVT DKLSSQAGKR GIVGSLANRT EETNYLKFLT FNGLIEWEKG MRAEQDKKTA
LTTLYRNEDM LMGLVGGRCT ETGVIQFPRS RISVNPNNHT VDTQEPYKFA EKKAKILSWS
ADFLSFSMNP PNHYGMVVFD EGGRIMMDFT DVEAGTVDSG MEVKLVFRIK EFDDKRGFRR
YFWKAVPVAA STAKSQTGQA AE
|
|---|
| |