Gene Plav_3055 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_3055 
Symbol 
ID5455772 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp3259935 
End bp3262496 
Gene Length2562 bp 
Protein Length853 aa 
Translation table11 
GC content66% 
IMG OID640878643 
ProductPyrrolo-quinoline quinone 
Protein accessionYP_001414319 
Protein GI154253495 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG4993] Glucose dehydrogenase 
TIGRFAM ID[TIGR03074] membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000520854 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones67 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAGAGA TGCCGCAAAC CGGCCAACCC ACCCGCCGCC CGCAAGACGA GTGGTGGGTG 
CCCGAGAAGC CCCGGCGCGG CTTCGGCTGG TGGTGGAGCG GCTTTATCGG CGCGGTGATC
GCGCTGACGG GGCTGCTGCT CGCGGGCGGC GGCTTCTGGC TGCTTCTGCT TGGCGGCTCC
TGGTATTACG TCATCGTCGG CATCGCGCTC ACGGCTGCGG GCCTGCTGAT GATGTTCCAC
GACATGGCGG GGCTCTGGAC CTATCTCGCT GCATGGCTCT TCACGCTCGC CTGGGCTTAC
TGGGAAGCGG GCCTCGAGCC TTGGGCGCAA GTGCCGCGCC TTGTCGCGCC GACGGTGCTG
CTTCTGCTGG CGCTCACCGC GATACCGGGC CTGCGTAAAC CCCGGATGGA TCGGCGATAC
CCCTCCTCCG GCACGGCGCT GAGCATTCTC GTGCTGCTCG GTCTTGGCGG GGCGCTGCTG
CTGCGCGATG TGGCGCCGCC CGCCTTCGCG AATGGCGGCC AAAGGCAGCA AAGCATGGAG
CCGGTGGAGG AAGGCGGGAA CGGCGGCGAA AACATCGACA TGCCGCCTGA AGTGACGGCG
GCGCCCACCA CTGCGGTGGA AGCGGACCGC ATTTTCAGCG CGGGCGCCGA CTGGCCGGCC
TATGGCGGCT CGAATGCCGC GACGCGCCAC TCACCCCTGA CGCAGATCAC GCCGGAGAAT
GTGTCGCGGC TACGGGAGGT CTGGACCTAT CGCAGCGGCG ACATGCCGAG CGAGGCGGCG
GCGGGCGAAT ATGCGCCGGA GAACACGCCG CTCAAGATCG GCAATAATCT CTATCACTGC
ACCGCGAAGA ACATCATGGT GGCGCTGGAC GCGGCAACCG GCGAGGAAAT CTGGCGCCAC
GACCCGGAAG TGCCCGATGC CGCCATTCCC TATGGCGCGA CCTGCCGGGG CGTCGCCTAT
TACGAGGCGC CGCAGGCGGC TGCCGGCGAG ACCTGCGCCA CGCGCATCAT GGAAGCGACG
CTCGACGCGC GGCTGATCGC CGTCGATGCC GCGACGGGCG CGCCCTGCCC CGGCTTTGGC
GAGAACGGCA CGGTCGATCT CAATGAGGGC ATCGGCGAGA CGGTGCCGGG CTGGTATTCC
GTGACCTCGC CGCCGACCAT TGTGCGCGGC ATTGCCGTTG TCGGCGCGCA GGTGAAGGAC
GGGCAGGCTG AAGACGCGCC ATCGGGCGTC ATCCGCGGCT ATGATGCGGT GAGCGGCGAA
CTCGCCTGGG CATGGGACAT GGGCCGACCG GACCGCAAGG GCGCACCGCC GGAAGGCGAG
ACCTATACGC GCGGCACACC CAACATGTGG ACCATCGCCG CCGGAGACAG CGCGCTCGGC
CTTGTTTATC TGCCGATGGG CAATTCCTCT GTCGATTACT GGGGCGCCGA CCGGGCCGAT
TACGAGAATG AATACAGCAC TTCGCTTGTG GCGCTGGATG TGACGACCGG CGATGTTGCC
TGGCATTTCC AGACGGTTCA TTACGATGTC TGGGACTACG ATCTCGGCTC GCAGCCAACG
CTGATCGATC TGCCTACGGA GGATGGCGCG GTGCCTGCGC TGATCCTGTC GAGCAAGCAG
GGACCGATCT ATGTGCTGAA CCGCGCGACG GGAGCGCCGC TCTTCCCGGT CGAGGAGCGG
CCGGTGCCGC AAGGCGGCGT CGAGCCCGAG AACCTGTCGC CGACGCAGCC TTATTCGAGC
TATGCGACGC TGAGCAAGGA AAGGCTCACC GAAAGCGACA TGTGGGGCAT GACGCCGCTC
GACCAGCTTT GGTGCCGCAT CCAGTTCCGC CGCGCATCCT ATGAAGGCGA ATACACACCG
CCGACCGCCG ACCGGCGCTT CATACAATAT CCGGGATATA ATGGCGGCTC CGACTGGGGC
AGCGTCGCCG TCGACACGGA GCGCGGCATC CTGATCGCAA ATTACAACGA CATGCCGAAC
TTCAACCGCC TGATCCCGCG CGAGGAAGCC GACGAGATGG GCCTGAAGGG CATTCATGAA
GGCGGCGGCG AGGAAGGCGA GAAAGGCAGC AGCAGCAGCC GCGCGGAAGG CGAAGGCGAC
GCGCAGGCAG GCGCGCCCTA TGCGGTGCAT GTCAATGCGG GCTGGCGGAT GCCGACGGGT
CTCCTCTGCA AGAAGCCGCC CTATGGCCAT ATCCGTGCCA TCGAACTTGC GACCGGCAAG
ACGATATGGG ACCGGCCGCT CGGCAGCGCC GAGAATAACG GCCCCTTCGG CATTCCGACG
ATGCTGCCCT TCACCATCGG CACGCCGAAC AATGGCGGAC CGCTGCTGAC GGCGGGCGGG
CTGATCTTCA TCGCGGCGAC GACGGACGAC AAGTTCCGCG CCATCGACAT CGCGACCGGC
GAGACGCTGT GGGAAACCAA ACTGCCGGCG GGCGGCCAGA CGACGCCGAT CACCTATGAG
GTGGAGGGAC GGCAATACAT CGCCATCGCA CCGGGCGGGC ATCACTTCAT GGAAACGAAA
ATCGGCGATT ACGTGATCGC CTATGCGCTG CCGGAGGACT GA
 
Protein sequence
MTEMPQTGQP TRRPQDEWWV PEKPRRGFGW WWSGFIGAVI ALTGLLLAGG GFWLLLLGGS 
WYYVIVGIAL TAAGLLMMFH DMAGLWTYLA AWLFTLAWAY WEAGLEPWAQ VPRLVAPTVL
LLLALTAIPG LRKPRMDRRY PSSGTALSIL VLLGLGGALL LRDVAPPAFA NGGQRQQSME
PVEEGGNGGE NIDMPPEVTA APTTAVEADR IFSAGADWPA YGGSNAATRH SPLTQITPEN
VSRLREVWTY RSGDMPSEAA AGEYAPENTP LKIGNNLYHC TAKNIMVALD AATGEEIWRH
DPEVPDAAIP YGATCRGVAY YEAPQAAAGE TCATRIMEAT LDARLIAVDA ATGAPCPGFG
ENGTVDLNEG IGETVPGWYS VTSPPTIVRG IAVVGAQVKD GQAEDAPSGV IRGYDAVSGE
LAWAWDMGRP DRKGAPPEGE TYTRGTPNMW TIAAGDSALG LVYLPMGNSS VDYWGADRAD
YENEYSTSLV ALDVTTGDVA WHFQTVHYDV WDYDLGSQPT LIDLPTEDGA VPALILSSKQ
GPIYVLNRAT GAPLFPVEER PVPQGGVEPE NLSPTQPYSS YATLSKERLT ESDMWGMTPL
DQLWCRIQFR RASYEGEYTP PTADRRFIQY PGYNGGSDWG SVAVDTERGI LIANYNDMPN
FNRLIPREEA DEMGLKGIHE GGGEEGEKGS SSSRAEGEGD AQAGAPYAVH VNAGWRMPTG
LLCKKPPYGH IRAIELATGK TIWDRPLGSA ENNGPFGIPT MLPFTIGTPN NGGPLLTAGG
LIFIAATTDD KFRAIDIATG ETLWETKLPA GGQTTPITYE VEGRQYIAIA PGGHHFMETK
IGDYVIAYAL PED