Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_3055 |
Symbol | |
ID | 5455772 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 3259935 |
End bp | 3262496 |
Gene Length | 2562 bp |
Protein Length | 853 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640878643 |
Product | Pyrrolo-quinoline quinone |
Protein accession | YP_001414319 |
Protein GI | 154253495 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4993] Glucose dehydrogenase |
TIGRFAM ID | [TIGR03074] membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.000520854 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 67 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGAGA TGCCGCAAAC CGGCCAACCC ACCCGCCGCC CGCAAGACGA GTGGTGGGTG CCCGAGAAGC CCCGGCGCGG CTTCGGCTGG TGGTGGAGCG GCTTTATCGG CGCGGTGATC GCGCTGACGG GGCTGCTGCT CGCGGGCGGC GGCTTCTGGC TGCTTCTGCT TGGCGGCTCC TGGTATTACG TCATCGTCGG CATCGCGCTC ACGGCTGCGG GCCTGCTGAT GATGTTCCAC GACATGGCGG GGCTCTGGAC CTATCTCGCT GCATGGCTCT TCACGCTCGC CTGGGCTTAC TGGGAAGCGG GCCTCGAGCC TTGGGCGCAA GTGCCGCGCC TTGTCGCGCC GACGGTGCTG CTTCTGCTGG CGCTCACCGC GATACCGGGC CTGCGTAAAC CCCGGATGGA TCGGCGATAC CCCTCCTCCG GCACGGCGCT GAGCATTCTC GTGCTGCTCG GTCTTGGCGG GGCGCTGCTG CTGCGCGATG TGGCGCCGCC CGCCTTCGCG AATGGCGGCC AAAGGCAGCA AAGCATGGAG CCGGTGGAGG AAGGCGGGAA CGGCGGCGAA AACATCGACA TGCCGCCTGA AGTGACGGCG GCGCCCACCA CTGCGGTGGA AGCGGACCGC ATTTTCAGCG CGGGCGCCGA CTGGCCGGCC TATGGCGGCT CGAATGCCGC GACGCGCCAC TCACCCCTGA CGCAGATCAC GCCGGAGAAT GTGTCGCGGC TACGGGAGGT CTGGACCTAT CGCAGCGGCG ACATGCCGAG CGAGGCGGCG GCGGGCGAAT ATGCGCCGGA GAACACGCCG CTCAAGATCG GCAATAATCT CTATCACTGC ACCGCGAAGA ACATCATGGT GGCGCTGGAC GCGGCAACCG GCGAGGAAAT CTGGCGCCAC GACCCGGAAG TGCCCGATGC CGCCATTCCC TATGGCGCGA CCTGCCGGGG CGTCGCCTAT TACGAGGCGC CGCAGGCGGC TGCCGGCGAG ACCTGCGCCA CGCGCATCAT GGAAGCGACG CTCGACGCGC GGCTGATCGC CGTCGATGCC GCGACGGGCG CGCCCTGCCC CGGCTTTGGC GAGAACGGCA CGGTCGATCT CAATGAGGGC ATCGGCGAGA CGGTGCCGGG CTGGTATTCC GTGACCTCGC CGCCGACCAT TGTGCGCGGC ATTGCCGTTG TCGGCGCGCA GGTGAAGGAC GGGCAGGCTG AAGACGCGCC ATCGGGCGTC ATCCGCGGCT ATGATGCGGT GAGCGGCGAA CTCGCCTGGG CATGGGACAT GGGCCGACCG GACCGCAAGG GCGCACCGCC GGAAGGCGAG ACCTATACGC GCGGCACACC CAACATGTGG ACCATCGCCG CCGGAGACAG CGCGCTCGGC CTTGTTTATC TGCCGATGGG CAATTCCTCT GTCGATTACT GGGGCGCCGA CCGGGCCGAT TACGAGAATG AATACAGCAC TTCGCTTGTG GCGCTGGATG TGACGACCGG CGATGTTGCC TGGCATTTCC AGACGGTTCA TTACGATGTC TGGGACTACG ATCTCGGCTC GCAGCCAACG CTGATCGATC TGCCTACGGA GGATGGCGCG GTGCCTGCGC TGATCCTGTC GAGCAAGCAG GGACCGATCT ATGTGCTGAA CCGCGCGACG GGAGCGCCGC TCTTCCCGGT CGAGGAGCGG CCGGTGCCGC AAGGCGGCGT CGAGCCCGAG AACCTGTCGC CGACGCAGCC TTATTCGAGC TATGCGACGC TGAGCAAGGA AAGGCTCACC GAAAGCGACA TGTGGGGCAT GACGCCGCTC GACCAGCTTT GGTGCCGCAT CCAGTTCCGC CGCGCATCCT ATGAAGGCGA ATACACACCG CCGACCGCCG ACCGGCGCTT CATACAATAT CCGGGATATA ATGGCGGCTC CGACTGGGGC AGCGTCGCCG TCGACACGGA GCGCGGCATC CTGATCGCAA ATTACAACGA CATGCCGAAC TTCAACCGCC TGATCCCGCG CGAGGAAGCC GACGAGATGG GCCTGAAGGG CATTCATGAA GGCGGCGGCG AGGAAGGCGA GAAAGGCAGC AGCAGCAGCC GCGCGGAAGG CGAAGGCGAC GCGCAGGCAG GCGCGCCCTA TGCGGTGCAT GTCAATGCGG GCTGGCGGAT GCCGACGGGT CTCCTCTGCA AGAAGCCGCC CTATGGCCAT ATCCGTGCCA TCGAACTTGC GACCGGCAAG ACGATATGGG ACCGGCCGCT CGGCAGCGCC GAGAATAACG GCCCCTTCGG CATTCCGACG ATGCTGCCCT TCACCATCGG CACGCCGAAC AATGGCGGAC CGCTGCTGAC GGCGGGCGGG CTGATCTTCA TCGCGGCGAC GACGGACGAC AAGTTCCGCG CCATCGACAT CGCGACCGGC GAGACGCTGT GGGAAACCAA ACTGCCGGCG GGCGGCCAGA CGACGCCGAT CACCTATGAG GTGGAGGGAC GGCAATACAT CGCCATCGCA CCGGGCGGGC ATCACTTCAT GGAAACGAAA ATCGGCGATT ACGTGATCGC CTATGCGCTG CCGGAGGACT GA
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Protein sequence | MTEMPQTGQP TRRPQDEWWV PEKPRRGFGW WWSGFIGAVI ALTGLLLAGG GFWLLLLGGS WYYVIVGIAL TAAGLLMMFH DMAGLWTYLA AWLFTLAWAY WEAGLEPWAQ VPRLVAPTVL LLLALTAIPG LRKPRMDRRY PSSGTALSIL VLLGLGGALL LRDVAPPAFA NGGQRQQSME PVEEGGNGGE NIDMPPEVTA APTTAVEADR IFSAGADWPA YGGSNAATRH SPLTQITPEN VSRLREVWTY RSGDMPSEAA AGEYAPENTP LKIGNNLYHC TAKNIMVALD AATGEEIWRH DPEVPDAAIP YGATCRGVAY YEAPQAAAGE TCATRIMEAT LDARLIAVDA ATGAPCPGFG ENGTVDLNEG IGETVPGWYS VTSPPTIVRG IAVVGAQVKD GQAEDAPSGV IRGYDAVSGE LAWAWDMGRP DRKGAPPEGE TYTRGTPNMW TIAAGDSALG LVYLPMGNSS VDYWGADRAD YENEYSTSLV ALDVTTGDVA WHFQTVHYDV WDYDLGSQPT LIDLPTEDGA VPALILSSKQ GPIYVLNRAT GAPLFPVEER PVPQGGVEPE NLSPTQPYSS YATLSKERLT ESDMWGMTPL DQLWCRIQFR RASYEGEYTP PTADRRFIQY PGYNGGSDWG SVAVDTERGI LIANYNDMPN FNRLIPREEA DEMGLKGIHE GGGEEGEKGS SSSRAEGEGD AQAGAPYAVH VNAGWRMPTG LLCKKPPYGH IRAIELATGK TIWDRPLGSA ENNGPFGIPT MLPFTIGTPN NGGPLLTAGG LIFIAATTDD KFRAIDIATG ETLWETKLPA GGQTTPITYE VEGRQYIAIA PGGHHFMETK IGDYVIAYAL PED
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