| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2994 |
|---|
| Symbol | |
|---|
| ID | 5456432 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 3192029 |
|---|
| End bp | 3193117 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640878581 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_001414258 |
|---|
| Protein GI | 154253434 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 0.649589 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCACT CAAGCTCCAT TGCCGGCAGG CGCACAGGCG CTCCGAAACC CTCGCTTATG
GGCAGGGCTC TGCTTGCCCT GCATGCGGCC GGAGCCCACC GCCTCGCCCC GAAATCGCTG
GCAGGCACGG GGGTCATCTT CATGCTGCAC CGGGTGCGGC CCGATGACGG CGCCGACTTC
GCGCCGAACC GCCTGCTGGA AGTCACGCCG GATTTTCTGG AAGAGACAAT CGCGACCGTC
CGGGCACTGG GCTATAGCTG CCTGTCGCTC GACGACGCCG TGTCGAGGCT CGATGCAGGC
GAAAGCACCG AACGCTTCGC CGTTTTCACG CTGGATGATG GCTACCGGGA CAACCTGACC
GACGCCCTGC CCGTTTTCGA GCGGCACGAC GTTCCCTTCA CGGTTTACCT GACCACAGGC
CTGCCGGATG GCGATGCTGA GATCTGGTGG GTGGCGCTCG AACGGGTCAT CTCCTCCGCC
ATCGCCGTGC ATGTAAAGCT GCCGGACGGC GAGATCGCGA TGTTCACGCG CGACGCCGGC
GAAAAGACGG AAGCCTGGGG CAAACTTTAT TGGGCGCTGC GCGCTCTGCC GGAAGAGCTG
CTGCGCGCGG AGATACGCCG TCTCGCCGCC GAACACGGCA TCGACATGGC GGCGCTGACG
CGGGAACTGG CAATGAACTG GGACGAGGTG AGAACGCTCG CCGCTCATCC TCTTGCAAGC
ATCGAAGCCC ATACCGCCAA CCACTTCGCA CAGTCGGGAC TTTCGTCGGC CGCTGCAAAG
CAGGACATCG AACGTGGTGT GGCGAGAATG GAAGCCGAAC TCGGCCGCCG CCCCACGCAT
TTTTCATATC CTTATGGAGA TCACGGTTCG GCCGGGGAGC GCGACTTTGA ACTTGCGCGG
GCACTCGGCT TCCGCTCTGC CACCACGACG CGCAAGGGCC TCATTCATGC CTCCCATGCC
GGAAGGCTTC ACAGCCTGCC CCGGCTGTCC CTGAATGGAG AGTATCAGGA CCGCAGGATG
CTGGAGGTCT TGTTGAGCGG ACTGCCCTTC GCGCTGGGCC GCCGGATACG CGCCCTCGGC
ATCGACTAG
|
|---|
| Protein sequence | MNHSSSIAGR RTGAPKPSLM GRALLALHAA GAHRLAPKSL AGTGVIFMLH RVRPDDGADF
APNRLLEVTP DFLEETIATV RALGYSCLSL DDAVSRLDAG ESTERFAVFT LDDGYRDNLT
DALPVFERHD VPFTVYLTTG LPDGDAEIWW VALERVISSA IAVHVKLPDG EIAMFTRDAG
EKTEAWGKLY WALRALPEEL LRAEIRRLAA EHGIDMAALT RELAMNWDEV RTLAAHPLAS
IEAHTANHFA QSGLSSAAAK QDIERGVARM EAELGRRPTH FSYPYGDHGS AGERDFELAR
ALGFRSATTT RKGLIHASHA GRLHSLPRLS LNGEYQDRRM LEVLLSGLPF ALGRRIRALG
ID
|
|---|
| |