| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2948 |
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| Symbol | |
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| ID | 5456719 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3146084 |
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| End bp | 3147895 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640878531 |
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| Product | single-stranded-DNA-specific exonuclease RecJ |
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| Protein accession | YP_001414212 |
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| Protein GI | 154253388 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
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| TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.181074 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.00226197 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGCTGGCGG CACCGACAAG AGCATTTCTG GGCGTCGAAC GGTCGGCGAC GGGGCGCGCA
TGGCTGAGCC GCCTTGCCGA CGACAGGCTG GCGCTGGCCA TTGCACAGCG CGAGGGGCTG
CCGGAAATCG TGGCGCGGGT GCTGGCGGGG CGCGGCGTGG CGCCGGAAGA CTGCGCCGCC
TATCTGGCGC CGTCGCTGAA GACGCTGATG CCGGACCCGC GCGTCGTCAC TGACATGGAA
AAGGCGGCGA CACGTGTGGC GCAGGCCATC ATGGCGGGCG AGAAGATTGC CGTGTTCGGC
GATTATGACG TAGACGGAGC AACATCGAGC GCGCTGCTGC AACGGTTTTT CCGCGCGGCT
GGGAGCGAAC TCAGGATCTA TATTCCGGAC CGTATCCGCG AGGGCTATGG CCCGAATGCG
CCGGCGCTGC TGCGGCTGAA GGATGAGGGC ATCGACCTCG TCATCACGGT CGATTGCGGG
ACGATGGCGC ACAAGGCGCT TGGACTTGCC GCGGATGCGG GGCTTCCCTC CATCGTGGTC
GATCACCACC AGGCGGAACC GGCGCTGCCG CCGGCCTATG CGCTGGTGAA CCCGAACCGG
CTGGACGACG AGAGCGGGCT TGGCCAGCTT GCCGCAGTGG GCGTTGCGTT CCTGTTCGTC
GTCGCCACCA ACCGGGCGTT GCGCGAGGCG GGCTGGTATG CGACGCGGCC GGAGCCCGAC
CTGATGCAAT GGCTCGACCT TGTTGCGCTT GGCACGATAT GCGACGTGGT GCCGCTTCTC
GGGCTCAACC GCGCTTTCGT GGCGCAAGGG CTGCGCGTGA TGGCGCGGCG GCAGAATATC
GGCCTTGCGG CGCTTGGCGA TGTGGCGCGG CTGAACGGTG CGCCGGTGCC CTATCATTGC
GGCTTTCTGC TGGGGCCGCG CGTCAATGCG GGCGGACGCG TGGGGAAGGC CGATCTCGGC
GCGCGGCTGC TCACGACCGA GGATGTGGAG GAAGCGCGCG CGATTGCCGA GGAACTCAAC
GTCATGAACG GGGAGCGGCA GGCTATCGAG GCGCAGGTGC TGGAAGAGGC GCTGACACAG
GTAGACGAGC GGCTGAGCGC GGCGCGGGCA AATACGCTGC CGCCGATTAT CATCGCCAGC
GGGCATGGCT GGCATCCGGG CGTCATCGGC ATTGTCGCCA GCCGGCTGAA GGACAAATAC
GAGCGGCCAA GCCTTGTGCT TGCCTTTGAC GGGAAGGGCG AGGGAAAGGG CTCGGGACGC
TCGCTGACGG GCGTCGATCT CGGCCGGGCG GTGACGGCGG CGCTGGAGGC GGGGCTGCTC
GTCAATGGCG GCGGCCACGC CATGGCGGCG GGGCTGACGC TCAGGGAAGA CAACCTGGAG
GCGCTGGAGG CGTTTCTGGC GAAGCGGCTG GCGGACGATG TTTCGGCGGC ATCGGAAGCG
CGGGCGCTGA AACTCGACGG GGCGCTTTCG GCGCGGGGCG CGACGCGCGA ACTATACGAG
CTGCTGCAGC AGGCGGGGCC CTATGGCGCG GGGAATGCGG AACCGCGATT CGCCGTGCCG
TCGGTGCGCG TCGTGAAGGC GGATATTGTG GGGAAAGACC ATGTGCGGGT TATCCTCAGC
GGCGAGGACG GGGGGCGGAT AAAGGCCATC GCCTTCCGGG CCGCGACGAC GCCGCTGGGC
GCCGTTCTGA TGGACAAGGG GAGCGGGCTT CTGCATGTGG CGGGGCGGCT CAGCGCCGAT
GACTGGCAGG GACGGCGCGC CGTTCAGCTC ACCATCGAGG ACGCGGTTCC GACGCGCGAT
GCCGCGCCCT GA
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| Protein sequence | MLAAPTRAFL GVERSATGRA WLSRLADDRL ALAIAQREGL PEIVARVLAG RGVAPEDCAA
YLAPSLKTLM PDPRVVTDME KAATRVAQAI MAGEKIAVFG DYDVDGATSS ALLQRFFRAA
GSELRIYIPD RIREGYGPNA PALLRLKDEG IDLVITVDCG TMAHKALGLA ADAGLPSIVV
DHHQAEPALP PAYALVNPNR LDDESGLGQL AAVGVAFLFV VATNRALREA GWYATRPEPD
LMQWLDLVAL GTICDVVPLL GLNRAFVAQG LRVMARRQNI GLAALGDVAR LNGAPVPYHC
GFLLGPRVNA GGRVGKADLG ARLLTTEDVE EARAIAEELN VMNGERQAIE AQVLEEALTQ
VDERLSAARA NTLPPIIIAS GHGWHPGVIG IVASRLKDKY ERPSLVLAFD GKGEGKGSGR
SLTGVDLGRA VTAALEAGLL VNGGGHAMAA GLTLREDNLE ALEAFLAKRL ADDVSAASEA
RALKLDGALS ARGATRELYE LLQQAGPYGA GNAEPRFAVP SVRVVKADIV GKDHVRVILS
GEDGGRIKAI AFRAATTPLG AVLMDKGSGL LHVAGRLSAD DWQGRRAVQL TIEDAVPTRD
AAP
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