| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2830 |
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| Symbol | |
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| ID | 5455562 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 3031806 |
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| End bp | 3034154 |
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| Gene Length | 2349 bp |
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| Protein Length | 782 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640878411 |
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| Product | ribonuclease R |
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| Protein accession | YP_001414094 |
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| Protein GI | 154253270 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.120928 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 0.835648 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCCCTCAC GCAAGCCCCC GAAAAAGACC GGCGCCGCGA AAAAAGACAC CGGCTCGAAA
AAGAAAGCCC GGGGCCTTCC CTCGCGTGAG GAGGTGCTTG CCTTCCTCGC CGACAATCCC
GGCAAGACCG GCAAGCGCGA GATCGGCCGC GCCTTCGGCG TGAAGGGCGA CGACCGCATC
GGCCTGAAGC AGATGCTGAA GGCCATGTCG GACGAAGGTC TGATCGCGAA GGATGAGACG
AAGAGCCTCC GCCGCGTCGG CGAAATGCCG CCGGTAACGG TCATCGAAAT CACCCACACC
GATACCGATG GCGAATTGAT CGCCCGCCCC GTCTCCTGGC CCGGCGAAGA CCTGCCCCCT
CTCATCGTCG TCACGCCCGA TACGCGGCGC GGCAAGCGCG ATGTCGACGA GCCGCCTGCC
GGTGTCGGCG ACCGCGTCCT CGCTCGCGTC GCGAAGTCGG AAGACGAAAC CTACCCCTAT
GAAGCGCAGG TCATCCGCCG CGTCGGCAAA GGCGCGGAGC GTGTGCTCGG CCTCTTCCGT
CTCACGCCCA AAGCCAAAAC CGCACGCCTC ATCCCCGTCG ACAAGAAGAT GCGCGTCGAA
TTCGAGATCG CCATCGAAGA TATTGGCGAC GCGGAAGACG GCAGCCTCGT CCTCGCCGAA
ACCATTCCCG GCAAGCGTTA CGGCGTCCCC CGCGCCCGTG TCCGCGAAGT CTTCGGCGAT
ATCGCAGACC CGCGCTCGAT CAGCCTCATC GCCATCCACA CCCACGGCAT CCCGGATTCC
TTTCCGGATG CCGTCATCGC CGAAGCCGAA GCCGCCAGGC ATCAGGGCCT CAAGGGCCGC
ACGGATCTCC GCGACATCCC CCTCATCACC ATCGACCCCG CCGATGCGCG CGACCATGAC
GACGCGGTCT GGGCCGCCCC CGACACCGAT CCGAAAAACG AAGGCGGCAT CGTCGCCATC
GTCGCCATCG CCGATGTCGC GGCCTATGTC CGTCCCAATT CCGCGATGGA CCGCGAGGCG
CTGAAGCGCG GCAACTCCAC CTACTTCCCG GACCGCGTCG TGCCGATGTT GCCCGAGCGC
ATCTCGAACG ACCTCTGCTC GCTGATCGAA AAGGAAGACC GCGCCTGCCT CGCCGTCCGC
ATGGTCTTCG ACCGCAACGG CAACAAGCGC GGTCATGAGT TCATCCGTGG CCTGATGAAA
TCCGCCGCCA GCCTCAGCTA CCGCCAGGTC CAGCAGGCAA TCGACGGAAA CCCGGACGAT
GCCACCGGCC CCCTTCTCGA ACCCGTGCTG AAACCTCTAT GGGACGCCTA CCGCATCCTC
GCGAAGGCCC GCGAGGCGCG CGGCCCGCTC GATCTCGATC TCCCCGAATA CAAGATCGAC
ATCGACGAGA AAGGCGGCGT CGGCGGCATC CGTATCGGCG AGAAATTCGA ATCCATGAAA
CTCATCGAGG AGTTCATGAT TCAGGCGAAC GTCTGCGCCG CCGAAACCGC CGAGGCGCAG
CATCGTCCCG TCATCTATCG CATCCACGAC GCCCCCTCGC GCGAGAAGCT CGTGGCGCTG
GCCGAATTCC TTGCCACGCT GAACCTGAGC TTCGCCAAGG GCGAGAACAT CCGCCCGGCA
AACTTCAACC GCATCCTGAA AGCCGTGGAC GGCACCGAGC ATGATCAGAT GGTGTCGGAT
GTCGTGCTGC GCTCTCAGGC GCAGGCCGTC TATGCGCCGG ACAATATCGG CCATTTCGGC
CTCAATCTTC GCCGCTACGC GCATTTCACC TCGCCCATCC GCCGCTATGC CGACCTCACG
GTCCACCGTG CGCTGATCGC CGGCCTCGGC CTCGGAAAAG ACGGCCAGAC GGAGGACGAA
ACATCCTCCC TCACCGAAAT CGCCGAACAC ATCTCGACAA CCGAGCGCCG CTCCATGCTC
GCCGAACGCG ACTCGAAGGA CCGCTTCATC GCCGCATTCC TTGAGGCCCG CATCGGCGCC
GAGTTCCGCG GCCGCATCGC CGGCGTCACG CGCTTCGGCC TCTTCGTGAA GCTGAACGAC
ACCGGCGCCG ATGGTTTCGT CCCGATCTCG ACGCTTGGCG GCGATTTCTA CCACCACGAC
GAAATCCTCC ACGCCCTCAC CGGCGAGCGC ACCGGCAAGA CCTACCGCCT CGGTGATGGC
GTCCTCGTCC GCCTGGAAGA ATGCGTCCCC GTCACCGGCG GCATGCGCTT CACGCTCCTC
GAAGGTGGCA GCGAGGGCAA ACCCGCCGGG CCCCGCCCCC GTTCCGGCCG CCGCCCCACT
GGCAAGGGCG GCTCCCGCCA GGGCGAGAAG AACCGGAAGC CGAAATCCTC CCCTCGAAAG
CGCCGCTGA
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| Protein sequence | MPSRKPPKKT GAAKKDTGSK KKARGLPSRE EVLAFLADNP GKTGKREIGR AFGVKGDDRI
GLKQMLKAMS DEGLIAKDET KSLRRVGEMP PVTVIEITHT DTDGELIARP VSWPGEDLPP
LIVVTPDTRR GKRDVDEPPA GVGDRVLARV AKSEDETYPY EAQVIRRVGK GAERVLGLFR
LTPKAKTARL IPVDKKMRVE FEIAIEDIGD AEDGSLVLAE TIPGKRYGVP RARVREVFGD
IADPRSISLI AIHTHGIPDS FPDAVIAEAE AARHQGLKGR TDLRDIPLIT IDPADARDHD
DAVWAAPDTD PKNEGGIVAI VAIADVAAYV RPNSAMDREA LKRGNSTYFP DRVVPMLPER
ISNDLCSLIE KEDRACLAVR MVFDRNGNKR GHEFIRGLMK SAASLSYRQV QQAIDGNPDD
ATGPLLEPVL KPLWDAYRIL AKAREARGPL DLDLPEYKID IDEKGGVGGI RIGEKFESMK
LIEEFMIQAN VCAAETAEAQ HRPVIYRIHD APSREKLVAL AEFLATLNLS FAKGENIRPA
NFNRILKAVD GTEHDQMVSD VVLRSQAQAV YAPDNIGHFG LNLRRYAHFT SPIRRYADLT
VHRALIAGLG LGKDGQTEDE TSSLTEIAEH ISTTERRSML AERDSKDRFI AAFLEARIGA
EFRGRIAGVT RFGLFVKLND TGADGFVPIS TLGGDFYHHD EILHALTGER TGKTYRLGDG
VLVRLEECVP VTGGMRFTLL EGGSEGKPAG PRPRSGRRPT GKGGSRQGEK NRKPKSSPRK
RR
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