Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2767 |
Symbol | |
ID | 5453864 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 2965368 |
End bp | 2966360 |
Gene Length | 993 bp |
Protein Length | 330 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640878348 |
Product | RluA family pseudouridine synthase |
Protein accession | YP_001414032 |
Protein GI | 154253208 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 55 |
Fosmid unclonability p-value | 0.901259 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATCAGG TATCTCAACT AGACGTTACG GAAGAAGAAG ACGGCGTTCG TCTCGACCGC TGGTTCAAGC GGCGTTTCCC CATGCTCACG CATGGCCGCC TCGAAAAGCT GCTGCGGACA GGGCAGGTGC GGGTCGACGG CGCGCGGGCA AAGGCCAATG CGCGCCTCGC CACGGGCCAG GTCGTGCGCG TACCGCCGCT CGGCGAGGAT GCGGACAAGC AGGCGCCGAA GGCGGTCCAT GCCCCGAGCG TCGACGATGC GGAGATGCTG CGTGCGAACG TCATCTACAA GGATAAATCC GTCCTTGTAC TGAACAAACC TGTCGGCCTC GCCGTGCAGG GCGGCACCAA GACGGAGCGG CATCTAGATG GAATGCTCGA TGCGCTCATC TTCGACGCAA AGGAGCGGCC GCGCCTCGTT CACCGTCTCG ACCGCGACAC ATCCGGCGTC CTCGTGCTCG CCCGTACCGC CAAGGCGGCA GCGGCGCTCG CGCAGGCGTT CAAGCAGAAG GACGCGCAGA AGATCTACTG GGCGCTTGTT GTCGGCGTGC CGGTGCCGCG TCAAGGCACC ATCGACCTCG CGCTGTCGAA GCAGGGCGGT CCGCGCGCCG AGCGCGTCTT TGCGGCAAAG CGCGGTGACG AGGGCGCGCG CGATGCCGTC ACCCATTTTT CTACCGTCTC CACCGCCGCG CATACGCTCG CCTGGGTCGC CTTCATGCCG CTCACCGGCC GCACGCACCA GATCCGCGCC CACGCCGCCG CCATCGAAAC GCCCATCGTC GGCGACGGCA AATATGGCGG CGTCAACGCG CATCCGGGCG GCGAGATCCC GCGCAAGCTT CACCTTCACG CGCGCTCCAT CGACATCGCC CATCCCGATG GCGGGCGCCT GCACGTTGAA GCCGACCTGC CGCCGCACAT GAAGACAAGC TGGAAACTGC TCGGCTTCGA TGAGCGCGAC GCGAAAGATG CCTTTGCGGG GTTGGAGGCG TAA
|
Protein sequence | MNQVSQLDVT EEEDGVRLDR WFKRRFPMLT HGRLEKLLRT GQVRVDGARA KANARLATGQ VVRVPPLGED ADKQAPKAVH APSVDDAEML RANVIYKDKS VLVLNKPVGL AVQGGTKTER HLDGMLDALI FDAKERPRLV HRLDRDTSGV LVLARTAKAA AALAQAFKQK DAQKIYWALV VGVPVPRQGT IDLALSKQGG PRAERVFAAK RGDEGARDAV THFSTVSTAA HTLAWVAFMP LTGRTHQIRA HAAAIETPIV GDGKYGGVNA HPGGEIPRKL HLHARSIDIA HPDGGRLHVE ADLPPHMKTS WKLLGFDERD AKDAFAGLEA
|
| |