| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2583 |
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| Symbol | rpsD |
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| ID | 5453861 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2788029 |
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| End bp | 2788649 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640878159 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_001413848 |
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| Protein GI | 154253024 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 0.542638 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 0.610834 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACAAAGC GCCAGGAGTC CAAGTACAAA ATCGACCGCC GGATGGGCGA AAACATCTGG
GGTCGTCCGA AGAGCCCGGT TAACCGCCGC GAATACGGCC CCGGCCAGCA TGGCCAGCGC
CGCAAGGGCA AGCTCTCGGA TTACGGCGTG CAGCTGCGCG CCAAGCAGAA GCTCAAGGGC
TTCTACGGCA ACATTTCCGA AAAGCAGTTC CGCGGCATCT ACAAGGAGGC GAACCGTCTC
CGTGGCGATA CCAGCGAAAT CCTGATCGGC CTGCTGGAGC GCCGCCTCGA TGCGGTCGTC
TACCGCGCCA AATTCGTGAT GACGCCTTTC GCCGCGCGCC AGTTCGTCGG CCATGGCCAC
ATTCTGGTCA ACGGCAAGCG CGTCAACGTG CCGAGCTACC GCGTTCGTGA AGGCGATGTG
ATCGAGGTGC GCGAGAAGTC GAAGCAGCTC GCGATCGTTC TCGAAGCCTC GCAGTCGGCC
GAGCGCGACA CGCCGGACTA CATCGAAGTC GATCACGACA AGATGGTTGC GAAGTTCGTC
CGTATTCCGG CCTTCAGCGA CGTTCCCTAC GCCGCTCACA TGGAACCGAA CCTCGTTATC
GAATTCTATT CGCGCAGCTA G
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| Protein sequence | MTKRQESKYK IDRRMGENIW GRPKSPVNRR EYGPGQHGQR RKGKLSDYGV QLRAKQKLKG
FYGNISEKQF RGIYKEANRL RGDTSEILIG LLERRLDAVV YRAKFVMTPF AARQFVGHGH
ILVNGKRVNV PSYRVREGDV IEVREKSKQL AIVLEASQSA ERDTPDYIEV DHDKMVAKFV
RIPAFSDVPY AAHMEPNLVI EFYSRS
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