| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2574 |
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| Symbol | fliR |
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| ID | 5453792 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2773846 |
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| End bp | 2774607 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640878151 |
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| Product | flagellar biosynthesis protein FliR |
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| Protein accession | YP_001413840 |
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| Protein GI | 154253016 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
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| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 0.0553295 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCACCA TAGATTTCCT GCCGCAAACG GCCTTCACCT TCATGCTGGT GTTCTCGCGG
CTTGCCGCGA TGATCATGCT GATGCCCGCG CTTGGCGAGG CGAGCATTCC GGCGCAGGTG
CGGCTCATGC TGGCGCTGCT GCTCTCCTTC GTGATGATGC CGCTGGTCGC GGGCAGCTAT
GGCGCGATCC CGGCAACGGT GCCCGGTCTC GTCTTCATCG TCTGCTCGGA AATCGCCGTC
GGCCTGTTTA TCGGCACGGC CGCGCGCCTC ATCATGAGTG CGCTGCATGT GGCGGGCAAC
ATCATCGCCG CGCAGATGAG CCTTTCCTTC GCGATGAACG TCGATCCCTC GCAGGGCCAG
CAGGGCGTGC TGATCGCGAA CTTCCTGTCG CTGCTCGGCG TGACGCTTAT TTTCGCGACC
AATCTCGATC ACGTGCTGAT CGCGGCGATG CGCGACAGCT ATGAACTGTT CAAGCCGGGC
GAGCCGATCC CGGTCGGCGA TTTCCTGGCG ATGGCTGTGA AGATGGTGTC GGGCTCGTTC
CGGCTCGGCC TTCAGCTTGC CGCGCCGTTC CTCGTCTTCG GCCTGATCTT CTATCTCGGC
ATCGGCATTC TTTCGAGGCT GATGCCGCAG ATTCAGATTT TCTTCATTGC GATGCCCGCC
AACATCGCGC TCGGTTTCAT TCTGCTTCTG TTGCTGCTCG GCGCATTGAT GACCTGGTTC
CTGCAGGGCT TCGAGCAGTA TATTTCGATG TTCGTCGGTT AG
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| Protein sequence | MITIDFLPQT AFTFMLVFSR LAAMIMLMPA LGEASIPAQV RLMLALLLSF VMMPLVAGSY
GAIPATVPGL VFIVCSEIAV GLFIGTAARL IMSALHVAGN IIAAQMSLSF AMNVDPSQGQ
QGVLIANFLS LLGVTLIFAT NLDHVLIAAM RDSYELFKPG EPIPVGDFLA MAVKMVSGSF
RLGLQLAAPF LVFGLIFYLG IGILSRLMPQ IQIFFIAMPA NIALGFILLL LLLGALMTWF
LQGFEQYISM FVG
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