Gene Plav_2553 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_2553 
Symbol 
ID5454530 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp2755816 
End bp2757459 
Gene Length1644 bp 
Protein Length547 aa 
Translation table11 
GC content66% 
IMG OID640878130 
ProductTPR repeat-containing protein 
Protein accessionYP_001413819 
Protein GI154252995 
COG category[R] General function prediction only 
COG ID[COG0457] FOG: TPR repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones53 
Fosmid unclonability p-value0.852958 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGACCA TGAGCAATCG GCGCCTTGCC GCGGGAAAAT CCGTCACCGG CGACCTTCAG 
AAAAAATACG AACAGGGTCT CCGGCTCCTG GATCAAGGCC GCGCCAACGA CGCCCTCACC
CGCTTCCGCA AGGTGCTCGC CGCCGACCCG CGCCATGTCA ACGCGCTCAA CGCCCTCTGC
CGCTCGCTCA TCGCGGTCGG CCGCCCCGAC GAAGCCGTCC ACGCCCTTGA TGCCGCAGCC
GCTTCCGCGC CGGAGGACAA GCAGCACCTT CTGGCCCTCG CCGGCATTTG CTTCGCATAC
AAACATGTTC GCGCCGAAGA GCTATATCGC CGCGTCCTGA CAATCGACCC GGATGCCTTC
GTCGCCCTCG GAAATCTCGC CAGCATAATT GTCGAGAAGG CAGGCTATCA GGAAGCGGTG
GACCTGATCT CGCACGCTCT CGAGATCAGG CCCGATACGG CCGAATGCTA CAACACGCTG
GGCCGCGCGC TTGCGGGCGC CGCCATGTAC GACGAAGCCG AGGCAAGCTA CCGCCGCGCC
ATCGCCATCA ATCCCGAACT GCCCACGGTT TACGCGAATT ACGGCGCCCT TCTCGATGTT
GTCGGGCGGC AGCAGGAGGC CCTGCAGCTC CTCCAGATCG CGCTCAACAT GAACCCGGAC
TGCGACGGCA CGCGCTGGAA CCTCGCCCGC GCCCTCCTCG CCACCGGCCA TATAGAAGCC
GGCTGGGACA TGTATGGCTT CGGCTTCGCC TGCCGCGAGC GGTCGCCGTA CCGCCCCTTC
CCCGGCCTCA TCTGGGAAGG CGAGGATCTC TCGGACAAGA CGTTCATGGT CTGGCGCGAA
CAGGGCCTCG GCGACGATCT CTACTTTTCG ACCTGCTACC ACGATCTGGT CCGCGAAGCC
GGCCACCTCA TCATCGAAAC GGACCGCCGC CTCGTCTCGC TCTACCAGCG GACCTGGCCT
GAAGCGACCG TCCGCGCCGA AACCGGCACC TCGACCGGCC TCGGCAATTA CGGCGAGGTC
GATTTCGACG TCACCGCCCC CGCCGGCATC GTCGCCTCCC GCCGCCGCCG TTCGCTGCAA
AGCTTTCCCG CAAATCCGCG CCCGCTCGTC GCCGATCCCG CAAGGCGGCA GGCCGCGCGC
GACTGGCTCG CCACCCTCGG CCCCGGCCCC CGCATCGGCT TCTGCTGGCG TTCCAGCGTA
CGAAATCCCA TCCGCGCCTC CTTCGCCACA AGGCTGGAAC ATTGGCTGGA TTTCCTGAAG
CTCGACACTG TCCAGGTCGT GAACCTGCAA TATGGCGAGG CCGACGAGGA AATAATCGAG
GCGGAGGAAA AATACGGCAT CCGTATCCAC CGGATGCCCG GCCTCGACAC CATGAACGAC
CTCGAAGGCA CCGCCGCGCT CACCGCCGAG CTGGATTTCT TCGTTGCCCA GTGGAATGCC
TCTTCCGAAA TGGCCGGCGC GCTTTGCATT CCGGGCGTCG TCTATCTCGC GGCCGGCAAC
CCGGTCCTGC TCGGCACCGG CGGCATCCCC TGGCACCCCT GCCTGAAGCC CTTCCAGATC
AGGCCGGGCT TCGACCCCCT CGCCCTCACC CGCGCCATGA CCGATGAAGC CCTGACCCGG
CTTCGCGCCG CCGGCAAGCT GTGA
 
Protein sequence
MSTMSNRRLA AGKSVTGDLQ KKYEQGLRLL DQGRANDALT RFRKVLAADP RHVNALNALC 
RSLIAVGRPD EAVHALDAAA ASAPEDKQHL LALAGICFAY KHVRAEELYR RVLTIDPDAF
VALGNLASII VEKAGYQEAV DLISHALEIR PDTAECYNTL GRALAGAAMY DEAEASYRRA
IAINPELPTV YANYGALLDV VGRQQEALQL LQIALNMNPD CDGTRWNLAR ALLATGHIEA
GWDMYGFGFA CRERSPYRPF PGLIWEGEDL SDKTFMVWRE QGLGDDLYFS TCYHDLVREA
GHLIIETDRR LVSLYQRTWP EATVRAETGT STGLGNYGEV DFDVTAPAGI VASRRRRSLQ
SFPANPRPLV ADPARRQAAR DWLATLGPGP RIGFCWRSSV RNPIRASFAT RLEHWLDFLK
LDTVQVVNLQ YGEADEEIIE AEEKYGIRIH RMPGLDTMND LEGTAALTAE LDFFVAQWNA
SSEMAGALCI PGVVYLAAGN PVLLGTGGIP WHPCLKPFQI RPGFDPLALT RAMTDEALTR
LRAAGKL