Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2553 |
Symbol | |
ID | 5454530 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 2755816 |
End bp | 2757459 |
Gene Length | 1644 bp |
Protein Length | 547 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640878130 |
Product | TPR repeat-containing protein |
Protein accession | YP_001413819 |
Protein GI | 154252995 |
COG category | [R] General function prediction only |
COG ID | [COG0457] FOG: TPR repeat |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 0.852958 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCGACCA TGAGCAATCG GCGCCTTGCC GCGGGAAAAT CCGTCACCGG CGACCTTCAG AAAAAATACG AACAGGGTCT CCGGCTCCTG GATCAAGGCC GCGCCAACGA CGCCCTCACC CGCTTCCGCA AGGTGCTCGC CGCCGACCCG CGCCATGTCA ACGCGCTCAA CGCCCTCTGC CGCTCGCTCA TCGCGGTCGG CCGCCCCGAC GAAGCCGTCC ACGCCCTTGA TGCCGCAGCC GCTTCCGCGC CGGAGGACAA GCAGCACCTT CTGGCCCTCG CCGGCATTTG CTTCGCATAC AAACATGTTC GCGCCGAAGA GCTATATCGC CGCGTCCTGA CAATCGACCC GGATGCCTTC GTCGCCCTCG GAAATCTCGC CAGCATAATT GTCGAGAAGG CAGGCTATCA GGAAGCGGTG GACCTGATCT CGCACGCTCT CGAGATCAGG CCCGATACGG CCGAATGCTA CAACACGCTG GGCCGCGCGC TTGCGGGCGC CGCCATGTAC GACGAAGCCG AGGCAAGCTA CCGCCGCGCC ATCGCCATCA ATCCCGAACT GCCCACGGTT TACGCGAATT ACGGCGCCCT TCTCGATGTT GTCGGGCGGC AGCAGGAGGC CCTGCAGCTC CTCCAGATCG CGCTCAACAT GAACCCGGAC TGCGACGGCA CGCGCTGGAA CCTCGCCCGC GCCCTCCTCG CCACCGGCCA TATAGAAGCC GGCTGGGACA TGTATGGCTT CGGCTTCGCC TGCCGCGAGC GGTCGCCGTA CCGCCCCTTC CCCGGCCTCA TCTGGGAAGG CGAGGATCTC TCGGACAAGA CGTTCATGGT CTGGCGCGAA CAGGGCCTCG GCGACGATCT CTACTTTTCG ACCTGCTACC ACGATCTGGT CCGCGAAGCC GGCCACCTCA TCATCGAAAC GGACCGCCGC CTCGTCTCGC TCTACCAGCG GACCTGGCCT GAAGCGACCG TCCGCGCCGA AACCGGCACC TCGACCGGCC TCGGCAATTA CGGCGAGGTC GATTTCGACG TCACCGCCCC CGCCGGCATC GTCGCCTCCC GCCGCCGCCG TTCGCTGCAA AGCTTTCCCG CAAATCCGCG CCCGCTCGTC GCCGATCCCG CAAGGCGGCA GGCCGCGCGC GACTGGCTCG CCACCCTCGG CCCCGGCCCC CGCATCGGCT TCTGCTGGCG TTCCAGCGTA CGAAATCCCA TCCGCGCCTC CTTCGCCACA AGGCTGGAAC ATTGGCTGGA TTTCCTGAAG CTCGACACTG TCCAGGTCGT GAACCTGCAA TATGGCGAGG CCGACGAGGA AATAATCGAG GCGGAGGAAA AATACGGCAT CCGTATCCAC CGGATGCCCG GCCTCGACAC CATGAACGAC CTCGAAGGCA CCGCCGCGCT CACCGCCGAG CTGGATTTCT TCGTTGCCCA GTGGAATGCC TCTTCCGAAA TGGCCGGCGC GCTTTGCATT CCGGGCGTCG TCTATCTCGC GGCCGGCAAC CCGGTCCTGC TCGGCACCGG CGGCATCCCC TGGCACCCCT GCCTGAAGCC CTTCCAGATC AGGCCGGGCT TCGACCCCCT CGCCCTCACC CGCGCCATGA CCGATGAAGC CCTGACCCGG CTTCGCGCCG CCGGCAAGCT GTGA
|
Protein sequence | MSTMSNRRLA AGKSVTGDLQ KKYEQGLRLL DQGRANDALT RFRKVLAADP RHVNALNALC RSLIAVGRPD EAVHALDAAA ASAPEDKQHL LALAGICFAY KHVRAEELYR RVLTIDPDAF VALGNLASII VEKAGYQEAV DLISHALEIR PDTAECYNTL GRALAGAAMY DEAEASYRRA IAINPELPTV YANYGALLDV VGRQQEALQL LQIALNMNPD CDGTRWNLAR ALLATGHIEA GWDMYGFGFA CRERSPYRPF PGLIWEGEDL SDKTFMVWRE QGLGDDLYFS TCYHDLVREA GHLIIETDRR LVSLYQRTWP EATVRAETGT STGLGNYGEV DFDVTAPAGI VASRRRRSLQ SFPANPRPLV ADPARRQAAR DWLATLGPGP RIGFCWRSSV RNPIRASFAT RLEHWLDFLK LDTVQVVNLQ YGEADEEIIE AEEKYGIRIH RMPGLDTMND LEGTAALTAE LDFFVAQWNA SSEMAGALCI PGVVYLAAGN PVLLGTGGIP WHPCLKPFQI RPGFDPLALT RAMTDEALTR LRAAGKL
|
| |