| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2535 |
|---|
| Symbol | |
|---|
| ID | 5453596 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 2736313 |
|---|
| End bp | 2737005 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640878112 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001413801 |
|---|
| Protein GI | 154252977 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.14801 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 0.635881 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGGGG CGGCGCTCAT CGAGGCGCGC GGGGTGACGC GCGTGCTGCA GGAAACCGTG
CCGGTGACGC TGGTGCGCGA GATCGATCTC AGCGTCGGAA AGGGCGAATT CGTGAGCGTT
ACCGGGCCTT CGGGCTCGGG AAAGTCGTCT CTGCTCTATT TGCTCGGACT GCTCGACGTG
CCGACCGCGG GGCATGTGTC AATCGAGGGG AAAGACACAA CGGGGCTCGA CGCGGATGAG
CTGGCGGCGG TCCGGCTCAA CAAGATCGGC TTCGTTTTCC AGTTTCACTT CCTGCTGCCG
GAATTCACCG TGCTTCACAA TGTGATGCTG CCCATGCGCC GGCTGGGCAG ACTGAGCGAA
AGAGAAATGG CGGAACGCGG CCATTTTTTG CTCAATGAAT TCGACGTTGC CGACCAGACG
AAGAAGCGCC CGGACCAGCT TTCAGGCGGT CAGCGGCAGC GCGTGGCGAT TGCGCGGGCG
CTCGCCAACG ACCCGGCGCT CATTCTTGCC GACGAGCCGA CAGGCAACCT CGACACAAAG
AACAGCGAGA TCGTGTACGG GATATTCGCG AAGCTCGTTC GCGACGAGGG GCGAACGGTG
ATCGCGGTCA CGCATGACCC GGAATTCGCG GCCGCGGCGT CGCGCAACGT CCATCTCGTG
GACGGAAAAA TCGACAGCGA TACAAGGCGT TAG
|
|---|
| Protein sequence | MTGAALIEAR GVTRVLQETV PVTLVREIDL SVGKGEFVSV TGPSGSGKSS LLYLLGLLDV
PTAGHVSIEG KDTTGLDADE LAAVRLNKIG FVFQFHFLLP EFTVLHNVML PMRRLGRLSE
REMAERGHFL LNEFDVADQT KKRPDQLSGG QRQRVAIARA LANDPALILA DEPTGNLDTK
NSEIVYGIFA KLVRDEGRTV IAVTHDPEFA AAASRNVHLV DGKIDSDTRR
|
|---|
| |