| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2488 |
|---|
| Symbol | |
|---|
| ID | 5454928 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 2690426 |
|---|
| End bp | 2691409 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640878065 |
|---|
| Product | pyridoxal-5'-phosphate-dependent protein beta subunit |
|---|
| Protein accession | YP_001413754 |
|---|
| Protein GI | 154252930 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1171] Threonine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.0974826 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 0.0534414 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACGG ACCTGCCGGA TGCGGCGGAT GTTCGCGCTG CGGCGGCGCG GATCGCCGGC
GTGGCGGTCA GAACGCCGCT TCTCGAGTTT CCGGCGCTGA ACGCGCGGAC TGGCGGCCGC
GTTTTCGTAA AGCCGGAGGT GCTGCAGCGG ACCGGCTCTT TCAAATTCCG CGGCGCGTGC
AACCGCTTGT CTCAGCTCTC GTCGGCTGAA GCGCCAGGCG GCATTGTCGC ATGGTCGTCC
GGCAATCATG CGCAGGGCGT TGCCGCTGCC GCCGCATTGC GCGGGCTCGC CGCCTGTATC
GTCATGCCGT CCGATGCGCC GCAGCTCAAG GTCGCGCGGA CGCGTGGTTT CGGCGCGGAA
ATCGTTTTTT ATGATCGCCT GAAAGAGAAC CGCGAGGAGA TAGGCCGGGG TCTGGCGGCG
GCGCGCGGCG CCATCATCGT GCCGCCTTAT GACGACCCGG ATATTATCGC AGGGCAGGGG
ACTGCGGCTC TTGAGATCGC GGAAGATGCA TCGCGGCTGG GCGTCGGGCT CGACGCTGTG
CTGGTGCCGG CTGGCGGCGG CGGTCTTGCG GCGGGCACCG CTCTTGCCAT CGGCGCGCTG
CTGCCGGATG CGAAAGTGTA TTGCGTCGAG CCGGCTCAAT TCGACGATCA CGCGCAATCG
CTGGCGAGCG GCGCACGGAT TGAAAATCCT TCGGGGGGCC ATTCCATTTG CGACGCATTG
ATGGCGCCGT TGCCGGGCGA AGTTACCTTC GCGATCAATG GCCCGCGCCT CGCGGGCGGC
CTCTCCGTCA CAGATGGCGA AGTCGAGGCG GCCATGCGTT TTGCATTTGA AGAAATGAAG
CTTGTCGTGG AGCCGGGTGG TGCTGTCGCG CTTGCCGCGC TGCTGTCCGG TAAACACGAT
GCGAGAGGTG CCGCTGTCGC GATTATCCTG AGTGGAGGCA ATGTGGATGC GGCGCTCTTC
AGCCGTGTTC TCTCGGCTGG CTAG
|
|---|
| Protein sequence | MKTDLPDAAD VRAAAARIAG VAVRTPLLEF PALNARTGGR VFVKPEVLQR TGSFKFRGAC
NRLSQLSSAE APGGIVAWSS GNHAQGVAAA AALRGLAACI VMPSDAPQLK VARTRGFGAE
IVFYDRLKEN REEIGRGLAA ARGAIIVPPY DDPDIIAGQG TAALEIAEDA SRLGVGLDAV
LVPAGGGGLA AGTALAIGAL LPDAKVYCVE PAQFDDHAQS LASGARIENP SGGHSICDAL
MAPLPGEVTF AINGPRLAGG LSVTDGEVEA AMRFAFEEMK LVVEPGGAVA LAALLSGKHD
ARGAAVAIIL SGGNVDAALF SRVLSAG
|
|---|
| |