Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2339 |
Symbol | |
ID | 5454623 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 2517277 |
End bp | 2517909 |
Gene Length | 633 bp |
Protein Length | 210 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640877917 |
Product | integrase family protein |
Protein accession | YP_001413608 |
Protein GI | 154252784 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4973] Site-specific recombinase XerC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.0020288 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCCACCT CACCTGCCAA TGCTCCCATC TATAGACCGA ATCCCTGGAA TAAGGGGCGC TTGGTGGGAC AGAAGCGTCC TCTGGCCCCG AAACACGTAT GGTCGATCAG AATTCGACTC GAAATGGCTG ATGACCGACG TGGTCTTGCC CTGTTCAATT TGGCAATTGA TAGCAAGCTT AGAGCTTGTG ATCTGGTTGC TTTGAAGGTG AACGACGTCT TCGTCGGTGG GCAGCCTCGC CAGCGCGCTA CCGTTGTTCA GCGAAAGACT GGCCGGCCAG TTCAGTTCGA AATTACAGAC ACCACCCGTG CCGCACTTGA GGGGTGGCTT CATCATCCCG CTATGTCTTC GGCCGAATTT CTATTTCCGT CCCGGGTGCA TAGCGCATGC CACATCTCAA CGCGTCAGTA TGCGCGCATC GTCAATACGT GGATTGCTTC CGTCGGCCTA GATCCGTCTG GATACGGAAC GCACTCGATG CGGAGAACCA AGGCGGCTCA GATATATCGC AAGACAGGAA ATTTGAGAGC GGTTCAGCTG CTTCTTGGCC ACACGAAGTT GGAAAGCACT GTCCGATACT TAGGTATCGA GGTTGATGAT GCGCTTAAAA TTGCGGAGTC AATTGAGCTA TGA
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Protein sequence | MSTSPANAPI YRPNPWNKGR LVGQKRPLAP KHVWSIRIRL EMADDRRGLA LFNLAIDSKL RACDLVALKV NDVFVGGQPR QRATVVQRKT GRPVQFEITD TTRAALEGWL HHPAMSSAEF LFPSRVHSAC HISTRQYARI VNTWIASVGL DPSGYGTHSM RRTKAAQIYR KTGNLRAVQL LLGHTKLEST VRYLGIEVDD ALKIAESIEL
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