| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2325 |
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| Symbol | |
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| ID | 5455265 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 2498450 |
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| End bp | 2503798 |
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| Gene Length | 5349 bp |
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| Protein Length | 1782 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640877905 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_001413596 |
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| Protein GI | 154252772 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0522858 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.00737544 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGCGTGG CAAGCGGAAA TCGGGTAGCG ACAGGGCGGC GCACCATGCG TGTAACCACT
TGGCGCTTCA TGCGTCTGCG GCGCAAGGCT GTGCCACCCG TCATCCTCCG ACGCAATCTG
ACGCGGCGTC TCCTCTCCAG CGTCGGCGTT GCCGCCCTTC TCGCGGGTGT TAGCCTCGCG
CTTCTTCCAG CCCCCACCCG CGCGGATACC TCATGGACGG GCGCTGCCGA CAGCGACTGG
AACAACGCAG CCAACTGGTC AAACGGTCTG CCGGTCAACA CTTCGGGAAC GACGAAGATC
GAAGGGCCGG TCGCCGCGAC TGTCGATGGT GTCAGTGTGG CGGACTCTGG CCGCACCAAT
ATCGGCTCCG CCGCGCAGGA CGGTTCGCTC ATCGTGCAGG GCGGCGGTAC GCTGAATGCG
GGTGTATTTG AGCTCTTCGG ATATAATGGC TTCAGCGGTA CCGCAACCAT CCGTGGCGCC
GGGTCCGGGA TATCCACTTC GTCGAGCCTC TTTGTCGGCG CCTACACGGG CGTCGGCCAT
ATCTTCATCG AGGACGGCGG AACGCTGACC ACCCCCTATT CTACATATAT GAGCCAGTAT
AACGGCTCGC TCGGTACCGT AACGGTGACT GGTTCAGGTT CGACCTGGAA CAGTAACTAT
GAGATCAATC TCGGCGGTGC CGAAGGCAAT TACGACGCGA CGGGTATCCT GACGATCGCG
GATGACGGCC TGGTCAACAT AAACAATGGC AACAGGAATC TGAATGTCGC CAAATCGACC
GGCTCCACCG GCACGCTGAA TATCGGCGCG GCGGAAGGCG ATGCCGCCGT CGCGGCGGGA
TCGTTGCAGG CAAAGAGTGT TGTGTTCGGG GCGGGCGACG GTACGCTCGT CTTCAATCAT
ACGGAAACGG ATTACACCTT CGCTCCGTCC ATCTCGGGCA ATGGCGGCGT ACATCAGCTC
GCGGGCACCA CCAACCTCTC CGGATCGAAT AGCTGGTCGG GAAGCACTCT GGTCGAAGGC
GGTATTCTGC GCGCGGGCGC GGCGGGCGCT CTTTCCGCCA ACGCCGCCTA CACGGTCAAT
GGCGGTACGC TCGATCTCAA CGATTTCGAC CTCACCGCAA CCGAACTCTC GGGCACGGGC
GGAACGGTCG ATCTCGGGAC CGCCGAACTC GAAGTCGACC AGGACGGCGA CTCCGTTTTC
GATGGCCTCA TCGCGGGTGC GGGCAGTCTG GTGAAGCTCG GTTCCGGCAT CCTCTCGCTG
ACCGGCGCGA ACACCTATTC CGGCGGCACA ACGCTCGGCG AGGGTACGCT CCGCCTCGAA
GACGACGATG CCATTGGCAC CGGCGCACTC ACCGTCACCG GCGGCACCCT CGACTATGAT
GACGGCATCG ACCTGTCGAA CGACATCGAC TTGCGGGCGC AGGCGACCCT CAACGTCACC
ACCGGCTCCG CCACCCAGTC CGGCAATATC GGCGAGACGG GCGGCAGCTT CGGTATCGTG
AAGTCCGGCG CGGGCATCCT CTCGCTCACC GGCGCGAACA CCTACACAGG CACCACCACT
GTTTCCGGCG GCACGCTGCG TGCCGGCAGT GCCGACGCTC TCGTCTCCGG CGCCTACATC
TTGAACGGCG GTACCCTCGA CCTCAATGAC TTCGATCTTT CCGCCTCCGG ACTTTCCGGT
GCAAGCGGTA CCGTCGATCT CGGCAGCGCC GAACTCGAAG TCGATCAGGA CAGCGACGGG
GTCTTCGGCG GCATCATCTC GGGCGCGGGA AGCCTCCTGA AGCTCGGCTC CGGTATGCTC
ACCCTCACGG GCGGGAGCAC CTATACGGGC CTCACCACCA TACGTGAGGG GACGCTTGCT
CTCGACGGCG GCTCTGTGGA GTCGTCCGAC GACGTCATCA TCGGAGATCT GGCCCATACG
GTGGGTGAAG TCACGGTGAC TGGTGCGGGA GCCTCGCTCG ACACCGACAG CAGTGTGCTT
GTCGGAGAGC TCGGTGAGGG AACACTGAAC GTCGAAAATG GCGGCGTTGT GACGGCCGAT
GTTGTCATTG CCGGGCATCT TTCGGGTTCG GACGGAGCGA TCCGTGTCAC CGGAACCGGA
TCGCAGGTCA ACAGCACCAG CTTGCTTCGG ATTGGCGATG AGGGCGTCGG GCGCCTGATC
GTGTCTGAAG GTGGCGCCGT GACGAATACA AGCACAGGCT ATATCGGCGC AGGCACGAAT
GGTGAGGGCG CCATGACTGT CACCGGCACA GGATCGAAAC TCGACAATTC CGGCATCCTC
TATGTTGGCG GCGAGTACAA TGGCGCGATT GGTGTCCTGA CCGTTGCCGG CGAAGCCGCT
GTCAATGTAG GGGCCGGCAG CGGCACAGTC CGTGTCGCGC ATCATTCCGG CGCCACCGGC
ACCCTCAATA TCGGTGCGGC GGAAGGCGAT GCCGCCGTCG CGGCCGGCAC ACTGAATGCC
GCCAGCCTGC AATTTGGTGC GGGTACCGGT CAGATTGTCT TCAATCATCT CGACGATGAC
CATGCCTTCT CCAGCGATGT TTCCGGCGCC GGCGAAGTGC TTCATCTTTC CGGCACCACC
ATCCTGACCG GCGAGAACAC CTATACCGGC GGCACCACCG TTTCGGGCGG CACGCTCCGC
GCGGGCCGCG TCGGCGCATT CACCTCCGGC GGCTACGAAG TGAATGGTGG CACGCTCGAC
CTCAACGATT TCGACCTTTC CATGTCCGAG CTCTCCGGCA TCGGCGGTGC CGTCGATCTC
GGCAGCGCGG CGCTCGCGGT CGGCAGCGGC AACACGGACG CGAATTTTGC GGGCGTGATC
TCAGGTATCG GCAGCCTCGA AAAGACGGGC CTGGGTTCCT TCACCCTCGC CGGCGCGAAC
AGCTACACTG GCGGCACGAC GGTTTCGGGC GGCACGCTGC GCGCGGGCGC CGCGTCGGCC
TTCGTCGACG GCAGCGCCTA TACGGTCGAT GGCGGCACGC TCGACCTCAA CGATTTCGAT
CTTTCCATGT CCGAGTTGTC GGGCACCGGC GGCACGATCG ATCTCGGCGG CGCGACGCTT
ACCGTCGGCA GCGGCAACAC GTTCACGAAC TTCGCGGGCG CGATCGAAGG AACGGGCGGT
CTCGAAAAGA CGGGAACGGG AGAACTGACG CTGACCGGCG CGAACAGCTA CACCGGCGGC
ACGACGATTT CCGGTGGTAC GCTCGAAGGC AGCACGTCGA GCCTCGTCGG CGATATCGTG
AACAATGCCA CGCTCGCCTT CACGCAGGCA TTCGACGGCA CGTTCGGCGG CGTCATATCT
GGCACGGGCA GTCTCGTGAA GTCCGGTTCC GGCGTTCTGA CCCTGACCGG CGCGAATAGC
TGGTCAGGCG GTACGACGAT CCGGCACGGC ACGCTCGAAG GCAGCACGTC GAGCCTCACC
GGCGACATCG TCAACGACGC GGCGCTTGTC TTCGCGCAGG CGGGCGACGG CACCTATGCG
GGCGCGGTCT CGGGCACCGG CAGCCTCGAG AAGACCGGCG CGGGCACGCT CACGCTCACC
GGCGCGAACG GCTACACCGG CGGCACCACG GTTTCCGGCG GTACGCTCGC GGGCAACACG
TCGAGCCTTC AGGGTGACAT CGTCAACAAT GCGAGCCTCC TCTTCGACCA GTCGGCGGAC
GGCACCTATG CGGGCGTCCT GTCCGGCAAC GGCGACATCG TGAAGTCCGG CGCGGGGAGC
CTCGTCCTCT CCGGCATCAG CGGCGCCTTC ACGGGCGGCC TGGAGGTGCT GTCGGGCAGC
CTCGTCGTCG ACGGCACCTT CGGGGGCGGC CTTCTCGTCT CGGGCGGCTT CCTCGGCGGT
TCGGGCACGG TCGGCAGCAC CACGCTCGGC GGCGGCGCGA CGCTCGCGGC GGGCAATTCG
ATCGGCACGC TCACCGTCGC GGGCGATCTC GCCTTCTCTG CCGGTTCTGT CCTCGCGGTC
GAGGTGAATG ACGGCGGCGA CGCCGCGGGC GTCAATGCCG ATTTCGTCCA TGTGACGGGC
GCGGCGACGA TCGCGAGCGG CGCGGTCGTC GAGGTCGCGC CGGCGAACGG CACGGATGAC
GGCATCACCT ATGCGCCCTC CACCACCTAC CGGATCCTCA CCGCCGATGG CGGCATCAGC
GGCGTCTTCG ACGGCGTCAC GGCGGGCTTC GCCTTCCTCA TGCCGGAAGT CTCCTACGAC
GCCACCAACG TCTTCCTCAT CCTCACGCAG ATGGCGGCCT TCGAGGATGT GGCGTCGACG
CCGAACCAGC AGGGCGTCGC GGCCGCGGCC GAGGCGCTCG GCGCCGGTAA CCCCCTCTAT
GACGAGATCA TCGGCATGTC GGAGGAAGAG GCGCAAGCGG CCTTCGACGC GCTCTCGGGC
GAGGCGCATG CAAGCTCGAC CGGCGTCTTT TCCAGCTCCG CCGGGATCGT CCGGCGGACG
ATCTTCTCCC GTCTCTTCTC GCGCTTCGGC GCGCCGCGCG GCTTCGCGGC GGCGGAAGGC
TATGTGCCGG CGGCGGGCGA CGAGACGCCG CATGGCTATA CGGTATGGGG AGAACTCGTC
CGCGGCTGGG GCGAGACGGA CGGGTCGGTG TCGGCGGCGG GCATCGAGCG CAATTCGACC
GGCTTCCTCG GCGGCGTTGA TCGCGAGATC GGCGAGGCAA GCCGCATCGG TATCGCGCTC
GGCTACAGCC ATGCCACCTT TGACGTCTCG GGGCGCGCCT CCTCGGGCGA AAGCGACAAC
TTCCATGTCG CGGGCTATGC GGGAACCGAA CTCGGTCCCA TGGACCTGAA GGGCGTCCTC
GGTTACAGCT ACCAGATGGC CGAAAGCCGC CGCCGTGTCG TCGTCGGCGG CGTCATCGAC
GATCTCTCGG CGGACTACGG CGCCCACACC TTCCAGGCAT CGGGTGAGGC TTCCGTCGAT
CTCGCAGCGG GTCCCGTCAC CCTGACGCCT TTCGCGGGCC TCGCCGTCGT TCATGTCGAG
ACGGAAGCCT TCACCGAGAC GGGCGGGCCG TCGGCGCTTT CCATCGCCTC CTCCAGCAAC
ACCACCGGCA TCTCTGAGCT CGGTCTGCGC GCCGCGCGCG AGGCGGGCTC CCTCACCCTT
TTCGGCTCAG CCTCCTGGCG TCACGTTTTC GGCGATGTCG AGCCCCTTTC CCGCGCCTCT
TTCGCAAGCT CGCCCGCTAC CACCTTTTCG GTTCGCGGCA CACCCCTCTC CGAGGACGTC
GCCTCCATCG GCGGCGGGGT CGAACTTCTC ATCGCCGAGG AAACGACGCT CGAGTTTTCC
TATCGCGGTG AATTCGCCTC CGACAGCCGC GACCATGGGC TGAAGGCGAA AGTTTCCATC
CGCTTTTGA
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| Protein sequence | MGVASGNRVA TGRRTMRVTT WRFMRLRRKA VPPVILRRNL TRRLLSSVGV AALLAGVSLA
LLPAPTRADT SWTGAADSDW NNAANWSNGL PVNTSGTTKI EGPVAATVDG VSVADSGRTN
IGSAAQDGSL IVQGGGTLNA GVFELFGYNG FSGTATIRGA GSGISTSSSL FVGAYTGVGH
IFIEDGGTLT TPYSTYMSQY NGSLGTVTVT GSGSTWNSNY EINLGGAEGN YDATGILTIA
DDGLVNINNG NRNLNVAKST GSTGTLNIGA AEGDAAVAAG SLQAKSVVFG AGDGTLVFNH
TETDYTFAPS ISGNGGVHQL AGTTNLSGSN SWSGSTLVEG GILRAGAAGA LSANAAYTVN
GGTLDLNDFD LTATELSGTG GTVDLGTAEL EVDQDGDSVF DGLIAGAGSL VKLGSGILSL
TGANTYSGGT TLGEGTLRLE DDDAIGTGAL TVTGGTLDYD DGIDLSNDID LRAQATLNVT
TGSATQSGNI GETGGSFGIV KSGAGILSLT GANTYTGTTT VSGGTLRAGS ADALVSGAYI
LNGGTLDLND FDLSASGLSG ASGTVDLGSA ELEVDQDSDG VFGGIISGAG SLLKLGSGML
TLTGGSTYTG LTTIREGTLA LDGGSVESSD DVIIGDLAHT VGEVTVTGAG ASLDTDSSVL
VGELGEGTLN VENGGVVTAD VVIAGHLSGS DGAIRVTGTG SQVNSTSLLR IGDEGVGRLI
VSEGGAVTNT STGYIGAGTN GEGAMTVTGT GSKLDNSGIL YVGGEYNGAI GVLTVAGEAA
VNVGAGSGTV RVAHHSGATG TLNIGAAEGD AAVAAGTLNA ASLQFGAGTG QIVFNHLDDD
HAFSSDVSGA GEVLHLSGTT ILTGENTYTG GTTVSGGTLR AGRVGAFTSG GYEVNGGTLD
LNDFDLSMSE LSGIGGAVDL GSAALAVGSG NTDANFAGVI SGIGSLEKTG LGSFTLAGAN
SYTGGTTVSG GTLRAGAASA FVDGSAYTVD GGTLDLNDFD LSMSELSGTG GTIDLGGATL
TVGSGNTFTN FAGAIEGTGG LEKTGTGELT LTGANSYTGG TTISGGTLEG STSSLVGDIV
NNATLAFTQA FDGTFGGVIS GTGSLVKSGS GVLTLTGANS WSGGTTIRHG TLEGSTSSLT
GDIVNDAALV FAQAGDGTYA GAVSGTGSLE KTGAGTLTLT GANGYTGGTT VSGGTLAGNT
SSLQGDIVNN ASLLFDQSAD GTYAGVLSGN GDIVKSGAGS LVLSGISGAF TGGLEVLSGS
LVVDGTFGGG LLVSGGFLGG SGTVGSTTLG GGATLAAGNS IGTLTVAGDL AFSAGSVLAV
EVNDGGDAAG VNADFVHVTG AATIASGAVV EVAPANGTDD GITYAPSTTY RILTADGGIS
GVFDGVTAGF AFLMPEVSYD ATNVFLILTQ MAAFEDVAST PNQQGVAAAA EALGAGNPLY
DEIIGMSEEE AQAAFDALSG EAHASSTGVF SSSAGIVRRT IFSRLFSRFG APRGFAAAEG
YVPAAGDETP HGYTVWGELV RGWGETDGSV SAAGIERNST GFLGGVDREI GEASRIGIAL
GYSHATFDVS GRASSGESDN FHVAGYAGTE LGPMDLKGVL GYSYQMAESR RRVVVGGVID
DLSADYGAHT FQASGEASVD LAAGPVTLTP FAGLAVVHVE TEAFTETGGP SALSIASSSN
TTGISELGLR AAREAGSLTL FGSASWRHVF GDVEPLSRAS FASSPATTFS VRGTPLSEDV
ASIGGGVELL IAEETTLEFS YRGEFASDSR DHGLKAKVSI RF
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