| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2324 |
|---|
| Symbol | |
|---|
| ID | 5456951 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 2496425 |
|---|
| End bp | 2498251 |
|---|
| Gene Length | 1827 bp |
|---|
| Protein Length | 608 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640877904 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001413595 |
|---|
| Protein GI | 154252771 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.601755 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.00265307 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGGGC AAGGACGGAA ATCAACATCT GGTATGCCCC GGATTCCCGG CGCTTTCCGG
GATATCCAGG TCAATTCCTG CCGCAATCCC ACCTGCTCGA ATTTCGGCAA TCCGGCCAGG
CCGTTCGTTC CCAGAGGTCG TCCCTCGTCG GGCGCGCCGG CAGCGCGGGA CGACTATGTT
CTGTCCGGGG ACGCAAAGTT GGCGCCGGAT AGCTTCCTCA AATGTAAGCG GTGCCTTCGA
ACCCACTCAA TCAAGAGCAA TGCGGCAATC GCCGCGGAGA TGTCTCGCAT CTCTGCCTAT
CTGGAGCCGC GGCCGGAGCC ATCGTGCCCG GCACCGGCCT GCGCGAATGC CGGCGTGGGC
GTGTATTCCC GACCCGAAGC CTATGCGTCG CAGGGAAGCC GCGGAGGGGC GCAGCGGTTC
AGATGTAAGG CTTGCCAAAG AACCTTCTCG GTAGCGTTGA AATCGACGGT GCGGCAGAGG
GCACCTCATC TCAATCGCAC CGTCTTTGCC GAAGTCGTAT CGAAGAAGCC GCTCCGCGGC
ATCATGGAGG TGACGGGACT TTCAGCGGCC GCCGTATATG ACAAGCTCGA TTTCCTCTAC
CGCCAGTGCC GGGGGTTCGC CGGCGAGCGC GAGAGCCGTG CCCATCGCAT CGAAAGAAAA
CGCGTGCGGC TCTGCGTCGA CCGGCAGGAC TACATGATAA ACTGGCGCAG CAAATCGGCG
CGCAAGAACA TTCAGCTCAC CGCCATCTGT ACGGTTGAAG CCGATAGCAG CTACGTGCTC
GGTCATCACC TCAACTTCGA CCCCGATATC AACCAGACCG AGGTTGAAGA CGCCGCGGCC
GTGAATGGTG ACTTCGCACC CGGCACGAGG AGCTATTTCC GGGCCCAGCC GCAATATTGG
CTGAATGCGG AGTTCGACCG GATGGCCGGG ATCTCGCGGA TGGAAGTCAG GCCGGATTTC
GACGGCGAGA CATTGACGGT GGACGAGCTG ATTGCCGTGA AGAGCCGATG GGAACGAAAC
CTGCCGGACC CGGAACGTCC GGACTTGCCC GGCCGCGGAA ATCAGCTGTC GCCCGACGGC
GTGATGACGC ATCTCGATTA CACCGCCTAT GCGCATGCCA GGCTCGTTCG CCGCTTCGTA
TCGGGCGCCA GATACGCGAC CATCTATAGC GACCAGGACG AAGTCCTCCG CGCCGCCTTC
ATCTCCGCCT TCGCGCCGAA GATTCTGATG GAAGAGGCCG AGATGGCTTA CGTCCAGTTC
CAGAAGCAGA TGACCATCGA CGAGAAGAAG GACCTGATGC GCAAGTCCAA CAAGGTCGTT
GCCTCGCTCA CACAAGCTTC CGACGATACG GAGCAGGCAG CAATCGTGAA GTTCATGGCG
GATGAGTATG CGGCGGCCGC TTCAAGCGAA CCGGACTGGC GCAAGCGCTG GATACCTCAT
CCCAGGAGCA CGATAAACGA GCCGAAGCGC CGCATCCTTT ATCTGACCGA TACCGGCAAC
AAGACGCCGG AGCGCATCGG CTGGACGCTA TCCGGCGCGA CGCTGGCGCC GGTGGACAAC
TACTTCATGC GTCTGCGGAG GAAAATCAAT TATCTTGAGC GCCCCATCCC GACCCGCTCG
AACGCCAGCC GTCTCTGGAG CGGCTATCAT GCCTACGACC CGAAGCGTGT TTTACAGATG
CTCGAGATAT TCCATGTCTA TACGAACTAC ATCCGCACGA AAGACGGCAA GAGCACACCG
GCGGTGAAGT TCGGTCTGGC GAAGGGGCCT GTGAGATTCG AGGACATCAT CTATTGGATG
CCAAAAGCGC CAACGTATCC TATATAG
|
|---|
| Protein sequence | MAGQGRKSTS GMPRIPGAFR DIQVNSCRNP TCSNFGNPAR PFVPRGRPSS GAPAARDDYV
LSGDAKLAPD SFLKCKRCLR THSIKSNAAI AAEMSRISAY LEPRPEPSCP APACANAGVG
VYSRPEAYAS QGSRGGAQRF RCKACQRTFS VALKSTVRQR APHLNRTVFA EVVSKKPLRG
IMEVTGLSAA AVYDKLDFLY RQCRGFAGER ESRAHRIERK RVRLCVDRQD YMINWRSKSA
RKNIQLTAIC TVEADSSYVL GHHLNFDPDI NQTEVEDAAA VNGDFAPGTR SYFRAQPQYW
LNAEFDRMAG ISRMEVRPDF DGETLTVDEL IAVKSRWERN LPDPERPDLP GRGNQLSPDG
VMTHLDYTAY AHARLVRRFV SGARYATIYS DQDEVLRAAF ISAFAPKILM EEAEMAYVQF
QKQMTIDEKK DLMRKSNKVV ASLTQASDDT EQAAIVKFMA DEYAAAASSE PDWRKRWIPH
PRSTINEPKR RILYLTDTGN KTPERIGWTL SGATLAPVDN YFMRLRRKIN YLERPIPTRS
NASRLWSGYH AYDPKRVLQM LEIFHVYTNY IRTKDGKSTP AVKFGLAKGP VRFEDIIYWM
PKAPTYPI
|
|---|
| |