| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2184 |
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| Symbol | |
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| ID | 5455992 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 2363641 |
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| End bp | 2365299 |
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| Gene Length | 1659 bp |
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| Protein Length | 552 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640877762 |
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| Product | flagellar M-ring protein FliF |
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| Protein accession | YP_001413455 |
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| Protein GI | 154252631 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.239668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 62 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCAACG TCTCAAATCT TTTGCAGTCA CTAGGTACAA TGCGCCTGGC CGCGCTTGGC
CTGGTAGCAA TTGCACTATT CAGCTTTTTT GCCTTCATCG CCTTGCGCAT GGGCAATGAG
CCCAAAGCTC TTCTCTTTTC CGATGTAGGC GTCGAAGACG CCGCCAAAAT GATCGCCGAA
CTTGATGCGG CCAAGGTCAG CTACGAGCTG CGCGGCAATG GTGGCATGAT ATATGTCCCG
CAGGCGGACG TTCTGCGCCT TCGTATGATG CTCGCTGGAA AGGGGCTGCC TGCCGGCGGA
ACCGTTGGCT ACGAAATCTT CGATAATGCT GACGCGCTCG GCACCACGAG CTTCCTCCAG
AACATCAACC ATTTGCGCGC CCTTGAAGGC GAGCTGGCCC GCACGATCCG GGCCATAGAA
GGCATCGGGG GTGCCCGTGT TCACCTCGTA TTGCCGGAGC GCGAGCTCTT TTCGCGCGAT
CGTCGCGAAC CAACTGCTTC AATAGTTCTC AAGGTCTCGC GCAACTCTCT GACAACACAA
CAGGTAAAAG CGATTCAATA CCTGGTGGCG TCCGCTGTAG ACGGACTTTC CCCCGGTCGT
GTCTCGATAG TCGATGAAAG AGGCGCTCTC CTTGCGAGCG GTGTTGGTGA GGACACTCAG
TCGCTCCTGG TTACTTCTGT AGACGAGCGG CGCACCGGCT ACGAAAACCG CCTTCGTACA
CATCTTGAGA ATATTCTTCA GCGCGTGGTC GGTGCAGACA AGGCACGTGT CGAAGTAACG
GCTCAGATGG ACTACAACCG CATTACCCAG ACATCCGACA CGTTCGATCC GAACGGACAG
GTCGTCCGCT CGACGCAGAC GGTTGACGAC AACTCGACCA GCGCGGACGG TGCGCAGAAC
GACGGTGTCA CGGTCGGAAA CAATCTTCCG AATGCAAATC TCGGGGGCGC AGAGGCCGAG
ACCGGTTCCC GGCAGGCAAG CAATCGTACG GAAGAAACGG TTAACTACGA AATTTCTCGC
ACCACCAAGA CCGAGGTGCT GGAACCTGGA CGCGTGAAGC GTCTTTCGGT GGCCGTGCTC
GTGGACGGTT CCTATGCGGC CGATGCCGAA GGAAACACCG TTTATACGCC CCGCACAGAG
CAAGAACTTG GGAAAATCGA AGCGTTGGTC AAGTCCGCTA TCGGTTTCGA TACCTCGCGC
GGAGATCAGG TGGAAATTGT AAACCTGCAG TTTGCCGCAG CACCCGACCT GGACGTGGGC
TTGTCTGAAG AAGAGGAAGC CAAAGGCTTC ATGGATTTCA CCCGGGCGGA AGTTATGCGC
ATGGCCGAAA TGGCTGTGCT CACTATCCTC GCTCTGGTCG CCATGCTTTT TGTTTTGCGC
CCAATGCTGT CCCGCGCTTT CTCCGGCTCC ACGACGACTG GCCAGATCGC CTACACAAAC
AACAGCGCAC AGGCAGTCCT TGAATCTCCG GACGGATTGG ATGTGCCCGC TGGAGCACTT
CCGGCACCCG ACCAGCTGAG CGAAGACATG ATGATCGACA TCGCGCAGGT CGCCGGCAAG
GTGAAGCAAT CTTCCGTTCG CAAAATTGGC GAGCTTGTAA CCAGCCACCC CGACGAATCC
ATCTCGATCC TGCGCAGCTG GCTGCACGAA ACCGCTTGA
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| Protein sequence | MSNVSNLLQS LGTMRLAALG LVAIALFSFF AFIALRMGNE PKALLFSDVG VEDAAKMIAE
LDAAKVSYEL RGNGGMIYVP QADVLRLRMM LAGKGLPAGG TVGYEIFDNA DALGTTSFLQ
NINHLRALEG ELARTIRAIE GIGGARVHLV LPERELFSRD RREPTASIVL KVSRNSLTTQ
QVKAIQYLVA SAVDGLSPGR VSIVDERGAL LASGVGEDTQ SLLVTSVDER RTGYENRLRT
HLENILQRVV GADKARVEVT AQMDYNRITQ TSDTFDPNGQ VVRSTQTVDD NSTSADGAQN
DGVTVGNNLP NANLGGAEAE TGSRQASNRT EETVNYEISR TTKTEVLEPG RVKRLSVAVL
VDGSYAADAE GNTVYTPRTE QELGKIEALV KSAIGFDTSR GDQVEIVNLQ FAAAPDLDVG
LSEEEEAKGF MDFTRAEVMR MAEMAVLTIL ALVAMLFVLR PMLSRAFSGS TTTGQIAYTN
NSAQAVLESP DGLDVPAGAL PAPDQLSEDM MIDIAQVAGK VKQSSVRKIG ELVTSHPDES
ISILRSWLHE TA
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