| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2151 |
|---|
| Symbol | |
|---|
| ID | 5456761 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 2331790 |
|---|
| End bp | 2332320 |
|---|
| Gene Length | 531 bp |
|---|
| Protein Length | 176 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640877728 |
|---|
| Product | uracil-DNA glycosylase superfamily protein |
|---|
| Protein accession | YP_001413422 |
|---|
| Protein GI | 154252598 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3663] G:T/U mismatch-specific DNA glycosylase |
|---|
| TIGRFAM ID | [TIGR00584] mismatch-specific thymine-DNA glycosylate (mug) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 0.725058 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 72 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTCC GGCGAAACAC GCGCGGCGAG AAGTTGCCGG ATGTTCTCGT GCCCGGCCTC
GATGTCGTCT TTGTCGGCAC GGCGCCGTCG CGCCGTTCCG CCGCCCTCGG CGCCTATTAC
GCCCATCCCG GCAACCGGTT CTGGCCGGCA CTTTTTGAGA CCGGCATCAC GCCGCGCCTC
TACCAGCCGC ATGAATATGC CGAACTCATC CATCTCGGCA TCGGCTTCAC CGACATGGCG
AAGCGCGCCT CCGGCATGGA TCACGAGATC GACCCGGCAC TGTTCGAGGT CGAGCGTTTT
GAAAAGGAAA TCCTGCGCTG CCGCCCGCGC GCCGTCGCCT TCACTTCGAA GAAGGCCGCG
AGCGTATGGA TGGGCGTGCC GACAGGCCGC CTTCTCCACG GCCACCAGCC GCGCCGCCCC
GGCTTCCCGG AAGTCTTCGT GCTCTCGTCC CCCTCCGGCG CCGCGCGGCG AAGCTGGAGC
ATCGAGCCGT GGGCAGGGCT TGCCCGGTTT CTCGGAAGAG CGAAGAGTTA G
|
|---|
| Protein sequence | MAFRRNTRGE KLPDVLVPGL DVVFVGTAPS RRSAALGAYY AHPGNRFWPA LFETGITPRL
YQPHEYAELI HLGIGFTDMA KRASGMDHEI DPALFEVERF EKEILRCRPR AVAFTSKKAA
SVWMGVPTGR LLHGHQPRRP GFPEVFVLSS PSGAARRSWS IEPWAGLARF LGRAKS
|
|---|
| |