| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1972 |
|---|
| Symbol | |
|---|
| ID | 5453382 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 2156213 |
|---|
| End bp | 2157424 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640877548 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_001413243 |
|---|
| Protein GI | 154252419 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 76 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGCG TTGCAGCGAG CCTGTTTCTG GGGACGGCCT TGCTCTGGGC CGGGGCTGCC
CCTGCCGAGG AAATCGGCAC CATCCGGCTC GGCGCGGCGG TCTCCCTGAC AGGAAAATAT
TCCTCCAACG GCGCCTTCAC ACGCAATGGC TACGACCTTG CCGTGAAGCG CATCAATGAG
GAGGGCGGCG TCACGGTCGC CGGCAAGCGC TACAATCTTG CGGTCATTTA CTATGATGAT
GAATCGACGC CCGCCCGCGG CGCGCAGCTT GTCGAGCGGC TGATCCAGCA GGATGGGGTC
AAATATCTTC TCGGCCCTTA TTCCTCCGGC CTCACCGAGG CGATCGCGCC CGTGACCGAA
AAATACGGCG TGCCGATGGT CGAGGCGAAC GGCGCCGCCG TCTCTCTCTT CCGCAAAGGC
TACCGCTATC TCTTCGCGGT CCTCTCCACC ACCGATCAAT ATCTGCGCGG TGCGGTCGAG
CTTGCCGCAA GCGTGAACGA GGACCCGTCG AAGCTTCGCG TCGCGATGGC CTTTGAAAAC
GATCCCTTCT CGCAGGATGT GCGCGAAGGC GTCATGGAAG ATGCCGCGAA ATTCGGCATG
AAGATCGTGA TCGACGACAA GCTGCCGCCG GAACTGAACG ATATGTCGGC CACGCTTTCC
AAGGCGAAGG TGCTGAAGCC CGACCTGCTG CTCGTCTCGG GCCATGACAA GGGGGCGGCG
CTCGTGGTCC GCCAGCTTGC CGATCAGCGC GTCGATGTGC CGATGGTCGC GATCACGCAT
TGCGACAGCG CGCAGATTGC GGAGAAGTTC GGAAAGATCG CCGAATACAC CCTCTGCGCC
GCGCAATGGG CCTCGACGCT GAAATATTCC GACGCGCTTT TCGGCAGCGC GGCGGACTAT
GCAGCGCTTT ACGAAGAAAC CTACGGCCAC GCGGCTCCCT ATCAGGCGGC GGAGTCAAGC
GCGGCGGTGC AGGTCTTCGC CGATGCTTTC GAGCGCGCCG GGTCGCTCGA GCCGGACGCC
GTGCGCGATG CACTGGCGGA GACGGACATC AAGACGTTTT ACGGGCCCGT GAAATTCGAC
GAGACCGGCA AGAACATCTC CAAGCCGACA GTCCTCTTCC AGGTACAGGA CGGCAAATAT
GTCGTCGTCT ATCCGGAAGC TTTTGCCGAA GCGAAGGTAC GCTGGCCAAC ACCTTCCTGG
CCGACACGCT GA
|
|---|
| Protein sequence | MKRVAASLFL GTALLWAGAA PAEEIGTIRL GAAVSLTGKY SSNGAFTRNG YDLAVKRINE
EGGVTVAGKR YNLAVIYYDD ESTPARGAQL VERLIQQDGV KYLLGPYSSG LTEAIAPVTE
KYGVPMVEAN GAAVSLFRKG YRYLFAVLST TDQYLRGAVE LAASVNEDPS KLRVAMAFEN
DPFSQDVREG VMEDAAKFGM KIVIDDKLPP ELNDMSATLS KAKVLKPDLL LVSGHDKGAA
LVVRQLADQR VDVPMVAITH CDSAQIAEKF GKIAEYTLCA AQWASTLKYS DALFGSAADY
AALYEETYGH AAPYQAAESS AAVQVFADAF ERAGSLEPDA VRDALAETDI KTFYGPVKFD
ETGKNISKPT VLFQVQDGKY VVVYPEAFAE AKVRWPTPSW PTR
|
|---|
| |