| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1892 |
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| Symbol | |
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| ID | 5454387 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2051085 |
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| End bp | 2054702 |
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| Gene Length | 3618 bp |
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| Protein Length | 1205 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640877469 |
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| Product | Urea carboxylase |
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| Protein accession | YP_001413164 |
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| Protein GI | 154252340 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1038] Pyruvate carboxylase
[COG1984] Allophanate hydrolase subunit 2
[COG2049] Allophanate hydrolase subunit 1
[COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
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| TIGRFAM ID | [TIGR00724] biotin-dependent carboxylase uncharacterized domain
[TIGR02712] urea carboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.434507 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 0.299649 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCACGA GAGTCCTTAT TGCCAATCGC GGCGAGATCG CGGTTCGCGT CATCAAGACG
CTGCGGCGCA TGGGTGTGTC GCCTGTCGCC ATCTATTCGG AGGCGGACCG CTTTGCGCCG
CATGTGCAGC TTGCCGACGA TGCGTTCTGC GTCGGCCCGG CTTCCGTTGC CGAAAGCTAT
TTGAACGTGG ATGCCATTCT CGACGCCGTA CGGGAGTCGG GGGCGGAGGC TGTGCATCCC
GGCTATGGTT TCCTGAGCGA GAACCCGGAA TTTGCGAGCG CGCTGTCGCG GGACGGCGTT
GCGTTCATCG GCCCGAGGCC GGAGCATATG TGTGCCTTTG CGTTGAAGCA TACGGCGCGC
GAACTGGCGG AGAAAAGCGG CGTGCCGCTG CTGCCGGGTT CAGGGCTGAT CGTCGATCTC
GACGATGCGC TGACGCAGGC GGAGGAGATC GGCTATCCGG TGATGCTGAA GAGCACGGCG
GGAGGCGGCG GGATCGGGCT GCAGCTTTGC CGCTCAGCCG CCGACATGCC ACGCCTTTAT
GACACGGTGC GGCGGCTTGC CTTGGCGAAC TTCAAGGATA GCGGGCTCTT TCTCGAAAAA
TACGTGGCTG CCGCGCGGCA TATCGAGGTG CAGATTTTCG GCGATGGCGA TGGCAACGTC
ATTGCGCTTG GCGAACGCGA CTGTTCGGCG CAAAGGCGCA ACCAGAAGGT CATCGAGGAG
ACGCCGGCAC CGAACCTTGA AGCCGGCATG CGCGCGGCGC TGCATGAAGC GGCGGTGCGG
CTTGGAGAGA GCGTTTCCTA TGCCTCGGCA GGCACGGTTG AATTCATCTA TGACGAGACG
GAAAGGAAGT TCTACTTCCT GGAAGTGAAC ACGCGGCTTC AAGTGGAGCA TCCCGTGACC
GAGGAGGTGA CGGGGCTCGA CCTGGTCGAG ATGATGGTGC GGCAGGCGGC GGGCGAGCTG
GGCGATCTTT CGGCCTGTGC GCGCGAGCCG AAGAGACATG CTATCGAGGT GCGGCTCTAT
GCGGAAGACG CCGGGCGCAA CTTCCAGCCG AGTTCCGGCC TGCTCACCGA AGTTTCGTTC
CCGGCCGATG CGCGCATCGA CGGATGGATT GCGACGGGAA CGGAGGTGAC GCCCTTCTAC
GATCCGATGC TAGCCAAGAT CATCGTCAAG GGCGAGACGA GAGAAGAAGC ATCGGCGAAG
CTCGCCTCCG CGCTCGATGC GACCAGTGTC TACGGCATCG AGACCAATCT CGATTACCTG
CGCTCCCTGG CGAGGTCCGC CGCATTTCTC GAAGGGCGGA TGCTGACCTC GACGCTTGGC
AGCTATGATT ATGAGAGCGC CGGTATCGAT GTTCTCGCGC CGGGCGCACA GTCGAGCCTG
CAGGATTATC CCGGCCGCGT AGGGCTCTGG AATGTCGGGG TTCCGCCGTC GGGACCAATG
GACCCGCTGT CGCACAGGCT GGCCAATCGT CTTGTCGGGA ACCCCGATGA GGCGGCAACC
CTCGAAATGA CGCTGAACGG ACCCACATTG CGGTTCCGCA GCGATGCAAC GATTGCCCTT
TGCGGCGCGG AAATGAAAGC GACGCTTGAT GGCGCGGCAG TCCCGTTCTG GCAGCCGGTA
GATGTAGCGC GCGGGCAGAC GCTCGCGCTC GGCGCGGTCG AAGGCGCGGG GCAGCGCGCC
TATCTCGCCG TGCGCAACGG TTTTGACGCA CCTGTCTATC TCGGTTCGCG CTCGGCCTTC
ACGCTGGGGC GCTTCGGCGG GCATGCGCCG GGTGCGCTGA AGACGGGCGA TGTGCTGCGC
ATCAATCGCC AGGGCGCGGT TTTGCCTGTT GCCGCGGGGC TCCCTGTTTC CGCGCGGCCC
GCGCTCGCTC GCGAATGGGA AATCGCGGCT CTCTATGGGC CGCATGGTGC GCCGGACTTT
TTTCTCGATG ACGACATCGA GACATTGTTC GGAACGGAAT ACGAGGTGCA TTACAACTCC
GCCCGAACGG GTGTGCGCCT TATCGGGCCG AAGCCCGGCT GGGCGCGAAA GGATGGCGGC
GAGGCAGGTC TTCATCCATC GAACATTCAC GACAATGCCT ATGCCGTGGG TACGATCGAT
TTCACCGGCG ACATGCCGAT CATTCTCGGG CCGGACGGAC CGAGCCTTGG CGGCTTTGTC
TGTCCGGCGA CGCTCGCCAA GGCGGAGCTC TGGAAACTTG GGCAGTTGAG GCCCGGCGAC
AAGGTTCGCT TCCGCCGCGT GTCGGACGAG GAAGCAGCGG AGATGCGCCG GGCGGAAGAA
ATATGGATTG CGACGCTCGC GCGGCCCGCC GCGCCCGCAC GCCTTTCAAC GCCGCAGGAG
GATGCCGTCC TCGCGCGGCT CACCGACCTC GAAACGGCGG TGACCTATCG CCGGGCGGGC
GACGATTATC TGCTGATCGA ATACGGGCCC ATCGTGCTCG ACTTTGCATT GCGCTTCCGC
GCCCATGCGA TGATGACGGC GCTGGAGGCG CGGGCGCTTG CCGGCATTCT CGAGATGACG
CCGGGCATCC GCTCGCTGCA GATTCATTTC GATCCGGATG TACTGCCGGC ACGAAAGCTG
CTCGCCATTC TGGAAGAAAT GGAGCGTGCG CTGCCGGCAA GCGCGGATAT CGAAGTGCCG
AGCCGCATCG TGCATCTGCC ATTGTCTTGG GATGATGAGG CGGCGCAGGA GGCCGTGCGA
AAATACGGAA CGCTGGTCCG GCCGGATGCG CCATGGGTGC CGAGCAATAT CGAGTTCATC
CGCCGCATCA ACGGGCTTGC GCATATCGAT GATGTAAGGC GCATCGTCTT CGACGCGGAC
TACATGGTGT TTGGGCTCGG CGACGTTTAT CTCGGCGCGC CCGTGGCGAC CCCGCTCGAT
CCAAGGCACA GGCTCGTTAC CACAAAGTAC AATCCCGCGC GCACATGGAC GCCGGAAAAT
GCCGTCGGCA TCGGCGGCGC CTATCTCTGC GTCTACGGCA TGGAAGGGCC GGGCGGCTAC
CAACTTGTCG GCCGCACGGT GCAGATGTGG AACAGCTGGC GGCAGACGGA GAATTTCCAG
AAGCCCTGGC TGCTGCGCTT CTTCGATAGG TTGCGCTTCT TTCCGGTATC GGCGGAAGAG
TTGCTTGAGG CGCGTGAGGC TTTCCCGCAT GGCAAGTATC AAGTGCGTGT GGAGGAAGGA
AGCTTTCGTC TCAGCGATTA TCTCTCCTAT CTCGACGAGA ATGCCGCGGC GATTGACGAT
TTTCGGTCGA TGCAACGGCA GGCTTTCGAG GAGGAGCGGC ACCGCTGGGA GGCGCAAGGC
ATCGCCATGG CCTCGATGGA GCCCGAAGTG GCCGCTATCG AGGAAATTTC CGATCTGCCG
GAAGGAGGGC AACTTGTGGA AGCGGGTGTG CCCGGAAATG TCTGGTCGAT AGGGGTTTCG
CCCGGCGACG AGGTGGCGGC CGATCAGACG CTCGTCATTC TCGAGTCGAT GAAAATGGAG
ATTGAGGTGC GCGCGCCGAT GCCCGCCCGC GTGCATGAGG TGCATTGCGC GCCTGGCAAG
ATGGTGCAGG CAGGGCAGGC GCTGGTAACG CTGGTGCCGC TCGATGAAGT GCAACCCAGG
CTGGAGGCCG CGTCATGA
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| Protein sequence | MFTRVLIANR GEIAVRVIKT LRRMGVSPVA IYSEADRFAP HVQLADDAFC VGPASVAESY
LNVDAILDAV RESGAEAVHP GYGFLSENPE FASALSRDGV AFIGPRPEHM CAFALKHTAR
ELAEKSGVPL LPGSGLIVDL DDALTQAEEI GYPVMLKSTA GGGGIGLQLC RSAADMPRLY
DTVRRLALAN FKDSGLFLEK YVAAARHIEV QIFGDGDGNV IALGERDCSA QRRNQKVIEE
TPAPNLEAGM RAALHEAAVR LGESVSYASA GTVEFIYDET ERKFYFLEVN TRLQVEHPVT
EEVTGLDLVE MMVRQAAGEL GDLSACAREP KRHAIEVRLY AEDAGRNFQP SSGLLTEVSF
PADARIDGWI ATGTEVTPFY DPMLAKIIVK GETREEASAK LASALDATSV YGIETNLDYL
RSLARSAAFL EGRMLTSTLG SYDYESAGID VLAPGAQSSL QDYPGRVGLW NVGVPPSGPM
DPLSHRLANR LVGNPDEAAT LEMTLNGPTL RFRSDATIAL CGAEMKATLD GAAVPFWQPV
DVARGQTLAL GAVEGAGQRA YLAVRNGFDA PVYLGSRSAF TLGRFGGHAP GALKTGDVLR
INRQGAVLPV AAGLPVSARP ALAREWEIAA LYGPHGAPDF FLDDDIETLF GTEYEVHYNS
ARTGVRLIGP KPGWARKDGG EAGLHPSNIH DNAYAVGTID FTGDMPIILG PDGPSLGGFV
CPATLAKAEL WKLGQLRPGD KVRFRRVSDE EAAEMRRAEE IWIATLARPA APARLSTPQE
DAVLARLTDL ETAVTYRRAG DDYLLIEYGP IVLDFALRFR AHAMMTALEA RALAGILEMT
PGIRSLQIHF DPDVLPARKL LAILEEMERA LPASADIEVP SRIVHLPLSW DDEAAQEAVR
KYGTLVRPDA PWVPSNIEFI RRINGLAHID DVRRIVFDAD YMVFGLGDVY LGAPVATPLD
PRHRLVTTKY NPARTWTPEN AVGIGGAYLC VYGMEGPGGY QLVGRTVQMW NSWRQTENFQ
KPWLLRFFDR LRFFPVSAEE LLEAREAFPH GKYQVRVEEG SFRLSDYLSY LDENAAAIDD
FRSMQRQAFE EERHRWEAQG IAMASMEPEV AAIEEISDLP EGGQLVEAGV PGNVWSIGVS
PGDEVAADQT LVILESMKME IEVRAPMPAR VHEVHCAPGK MVQAGQALVT LVPLDEVQPR
LEAAS
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