| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1819 |
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| Symbol | |
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| ID | 5456864 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1971979 |
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| End bp | 1972557 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640877398 |
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| Product | plasmid transfer protein TraF |
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| Protein accession | YP_001413093 |
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| Protein GI | 154252269 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGAGC GGCTCTCCCT CATCGCCGAG AGCGGCGCGC TGATTCCCAT GCGGTCTCCG
CGCGGCCCGA AACATCCGCG CCGCCGCAGG CGTCTTCTTC TCTGGACGGT GTTCGGCGTC
GGCCTGATCG GCGCAACGGC GCTCTTCGAA CCGCTGCCGC GTCTCGTCTG GAACGCGAGC
GCCAGCGCGC CGCGCGGGCT CTATCTGCGT CTCTCGCAGG ATTTCGTTCG GGGCGATCTG
GTGCTGGCGC GATTGCCCGA TGAAGTGCGG CAGCTTGCCG ACGAACGGCA CTACCTCGCG
CGGGACGCCT TGCTGATCAA GCGCGTTGTC GCCTCCCGTT TCGACACGGT CTGCATGATG
GGCAACGATC TCTATATCAA CGGACGGCAC ACGGCGCGGC GGCTAGAGCA AGACGGCGCG
GGCCGCCCGA TGTCGCGCTG GCAGGGCTGC GAGCGGTTGG GCGGCTATCA CGTTTTTCTT
CTCGCCGAAG GCGAACCCGT CTCCTTCGAC GGGCGGTATT TCGGGCCGGT TGAGCGGCGG
CTCGTCATCG GCAGGCTGGT GCCGCTATGG ATATTCTGA
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| Protein sequence | MNERLSLIAE SGALIPMRSP RGPKHPRRRR RLLLWTVFGV GLIGATALFE PLPRLVWNAS
ASAPRGLYLR LSQDFVRGDL VLARLPDEVR QLADERHYLA RDALLIKRVV ASRFDTVCMM
GNDLYINGRH TARRLEQDGA GRPMSRWQGC ERLGGYHVFL LAEGEPVSFD GRYFGPVERR
LVIGRLVPLW IF
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